RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 PPM1EQ8WY54 764 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 VWCEQ96DN2 955 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 IFIH1Q9BYX4 1025 aaKnown RBP8.31□□□□□ -1.08
SCFD1-222ENST00000556768 ALG2Q9H553 416 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 YBX2Q9Y2T7 364 aaKnown RBP8.31□□□□□ -1.08
SCFD1-222ENST00000556768 INSL6Q9Y581 213 aa8.31□□□□□ -1.08
SCFD1-222ENST00000556768 POTEB3A0JP26 581 aa8.3□□□□□ -1.08
SCFD1-222ENST00000556768 CARNS1A5YM72 827 aa8.3□□□□□ -1.08
SCFD1-222ENST00000556768 FAM86B1E9PN63 330 aa8.3□□□□□ -1.08
SCFD1-222ENST00000556768 DDX39AO00148 427 aaKnown RBP8.3□□□□□ -1.08
SCFD1-222ENST00000556768 GJB5O95377 273 aa8.3□□□□□ -1.08
SCFD1-222ENST00000556768 FAM86B2P0C5J1 330 aa8.3□□□□□ -1.08
SCFD1-222ENST00000556768 INSRRP14616 1297 aa8.3□□□□□ -1.08
SCFD1-222ENST00000556768 MYOGP15173 224 aa8.3□□□□□ -1.08
SCFD1-222ENST00000556768 TOB2Q14106 344 aaPredicted RBP8.3□□□□□ -1.08
SCFD1-222ENST00000556768 NTRK3Q16288 839 aa8.3□□□□□ -1.08
SCFD1-222ENST00000556768 PKN1Q16512 942 aa8.3□□□□□ -1.08
SCFD1-222ENST00000556768 PLEKHG4Q58EX7 1191 aa8.3□□□□□ -1.08
SCFD1-222ENST00000556768 PDXDC2PQ6P474 469 aa8.3□□□□□ -1.08
SCFD1-222ENST00000556768 POTEBQ6S5H4 581 aa8.3□□□□□ -1.08
SCFD1-222ENST00000556768 NUDT18Q6ZVK8 323 aa8.3□□□□□ -1.08
SCFD1-222ENST00000556768 RPAINQ86UA6 219 aa8.3□□□□□ -1.08
SCFD1-222ENST00000556768 SMAP1Q8IYB5 467 aaPredicted RBP8.3□□□□□ -1.08
SCFD1-222ENST00000556768 NME8Q8N427 588 aa8.3□□□□□ -1.08
SCFD1-222ENST00000556768 WASF1Q92558 559 aa8.3□□□□□ -1.08
SCFD1-222ENST00000556768 VPS54Q9P1Q0 977 aa8.3□□□□□ -1.08
SCFD1-222ENST00000556768 NID2Q14112 1375 aa8.3□□□□□ -1.08
SCFD1-222ENST00000556768 LRRC37A2A6NM11 1700 aa8.3□□□□□ -1.08
SCFD1-222ENST00000556768 LTBP2Q14767 1821 aa8.3□□□□□ -1.08
SCFD1-222ENST00000556768 HBP1O60381 514 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 PSAPP07602 524 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 COL9A1P20849 921 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 ADAM17P78536 824 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 KRT76Q01546 638 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 VAC14Q08AM6 782 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 GPNMBQ14956 572 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 ZNF746Q6NUN9 644 aaPredicted RBP8.29□□□□□ -1.08
SCFD1-222ENST00000556768 SWSAP1Q6NVH7 229 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 USP38Q8NB14 1042 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 ARNTL2Q8WYA1 636 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 SYMPKQ92797 1274 aaKnown RBP8.29□□□□□ -1.08
SCFD1-222ENST00000556768 WNT8BQ93098 351 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 ZNF302Q9NR11 478 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 PCDHA4Q9UN74 947 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 CEP131Q9UPN4 1083 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 PCDHA10Q9Y5I2 948 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 SCN10AQ9Y5Y9 1956 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 LCTP09848 1927 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 CUL9Q8IWT3 2517 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 MBLAC1A4D2B0 266 aaPredicted RBP8.29□□□□□ -1.08
SCFD1-222ENST00000556768 WDR64B1ANS9 1081 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 ATG7O95352 703 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 ITGB3BPQ13352 177 aaPredicted RBP8.29□□□□□ -1.08
SCFD1-222ENST00000556768 MBTPS1Q14703 1052 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 CCDC85BQ15834 202 aaPredicted RBP8.29□□□□□ -1.08
SCFD1-222ENST00000556768 FAM26DQ5JW98 314 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 ODR4Q5SWX8 454 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 FAM117BQ6P1L5 589 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 ABHD15Q6UXT9 468 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 FAM43BQ6ZT52 329 aaPredicted RBP8.29□□□□□ -1.08
SCFD1-222ENST00000556768 BLIDQ8IZY5 108 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 MICALL1Q8N3F8 863 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 DNAJB3Q8WWF6 145 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 YME1L1Q96TA2 773 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 FAM49AQ9H0Q0 323 aaPredicted RBP8.29□□□□□ -1.08
SCFD1-222ENST00000556768 CERS4Q9HA82 394 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 BRMS1Q9HCU9 246 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 TELO2Q9Y4R8 837 aa8.29□□□□□ -1.08
SCFD1-222ENST00000556768 TRANK1O15050 2925 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 CCDC194A0A1B0GVG4 234 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 MARCH6O60337 910 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 GAS7O60861 476 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 UPP2O95045 317 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 NUDT7P0C024 238 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 TMOD1P28289 359 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 CIITAP33076 1130 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 DEFB103AP81534 67 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 TAP1Q03518 808 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 PLCB4Q15147 1175 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 ZNF484Q5JVG2 852 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 TRAF7Q6Q0C0 670 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 TRMT1LQ7Z2T5 733 aaKnown RBP8.28□□□□□ -1.08
SCFD1-222ENST00000556768 RASGRP4Q8TDF6 673 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 TBCKQ8TEA7 893 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 ATP8B4Q8TF62 1192 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 CRYGNQ8WXF5 182 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 FAM167AQ96KS9 214 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 TGS1Q96RS0 853 aaKnown RBP8.28□□□□□ -1.08
SCFD1-222ENST00000556768 RIT2Q99578 217 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 FTHL17Q9BXU8 183 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 NRBP2Q9NSY0 501 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.28□□□□□ -1.08
SCFD1-222ENST00000556768 PCDHA2Q9Y5H9 948 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 SQORQ9Y6N5 450 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 MUC3AQ02505 3323 aa8.28□□□□□ -1.08
SCFD1-222ENST00000556768 SPTBN5Q9NRC6 3674 aaKnown RBP8.27□□□□□ -1.09
SCFD1-222ENST00000556768 IGLV3-22A0A075B6J6 115 aa8.27□□□□□ -1.09
SCFD1-222ENST00000556768 SMIM35A0A1B0GVV1 85 aa8.27□□□□□ -1.09
SCFD1-222ENST00000556768 DHX15O43143 795 aaKnown RBP8.27□□□□□ -1.09
SCFD1-222ENST00000556768 HOXA2O43364 376 aa8.27□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms