RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 MCM7P33993 719 aa15.43■□□□□ 0.06
SHMT2-219ENST00000555563 GNL2Q13823 731 aaKnown RBP15.43■□□□□ 0.06
SHMT2-219ENST00000555563 LPIN1Q14693 890 aa15.43■□□□□ 0.06
SHMT2-219ENST00000555563 TMCO2Q7Z6W1 182 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-219ENST00000555563 NOSTRINQ8IVI9 506 aa15.43■□□□□ 0.06
SHMT2-219ENST00000555563 HERC6Q8IVU3 1022 aa15.43■□□□□ 0.06
SHMT2-219ENST00000555563 SLFN12Q8IYM2 578 aa15.43■□□□□ 0.06
SHMT2-219ENST00000555563 PHOSPHO2Q8TCD6 241 aa15.43■□□□□ 0.06
SHMT2-219ENST00000555563 GUCD1Q96NT3 240 aa15.43■□□□□ 0.06
SHMT2-219ENST00000555563 IFIH1Q9BYX4 1025 aaKnown RBP15.43■□□□□ 0.06
SHMT2-219ENST00000555563 NKX2-4Q9H2Z4 354 aa15.43■□□□□ 0.06
SHMT2-219ENST00000555563 SEPT9Q9UHD8 586 aaPredicted RBP15.43■□□□□ 0.06
SHMT2-219ENST00000555563 MSRAQ9UJ68 235 aa15.43■□□□□ 0.06
SHMT2-219ENST00000555563 LAMA2P24043 3122 aaKnown RBP15.43■□□□□ 0.06
SHMT2-219ENST00000555563 UNC80Q8N2C7 3258 aa15.42■□□□□ 0.06
SHMT2-219ENST00000555563 M0QZ92 97 aa15.42■□□□□ 0.06
SHMT2-219ENST00000555563 EFCAB14O75071 495 aa15.42■□□□□ 0.06
SHMT2-219ENST00000555563 STBD1O95210 358 aa15.42■□□□□ 0.06
SHMT2-219ENST00000555563 BAG4O95429 457 aaKnown RBP15.42■□□□□ 0.06
SHMT2-219ENST00000555563 GJB2P29033 226 aa15.42■□□□□ 0.06
SHMT2-219ENST00000555563 PSMC5P62195 406 aa15.42■□□□□ 0.06
SHMT2-219ENST00000555563 FBXO47Q5MNV8 452 aa15.42■□□□□ 0.06
SHMT2-219ENST00000555563 IER5Q5VY09 327 aa15.42■□□□□ 0.06
SHMT2-219ENST00000555563 NCAPH2Q6IBW4 605 aa15.42■□□□□ 0.06
SHMT2-219ENST00000555563 TSHZ1Q6ZSZ6 1077 aa15.42■□□□□ 0.06
SHMT2-219ENST00000555563 PHF6Q8IWS0 365 aaKnown RBP eCLIP15.42■□□□□ 0.06
SHMT2-219ENST00000555563 KIAA0319LQ8IZA0 1049 aa15.42■□□□□ 0.06
SHMT2-219ENST00000555563 COL25A1Q9BXS0 654 aaPredicted RBP15.42■□□□□ 0.06
SHMT2-219ENST00000555563 TMEM60Q9H2L4 133 aa15.42■□□□□ 0.06
SHMT2-219ENST00000555563 SEMA6BQ9H3T3 888 aa15.42■□□□□ 0.06
SHMT2-219ENST00000555563 PCDHA11Q9Y5I1 949 aa15.42■□□□□ 0.06
SHMT2-219ENST00000555563 U2AF2P26368 475 aaKnown RBP eCLIP15.41■□□□□ 0.06
SHMT2-219ENST00000555563 CLCN3P51790 818 aa15.41■□□□□ 0.06
SHMT2-219ENST00000555563 TARBP2Q15633 366 aaKnown RBP15.41■□□□□ 0.06
SHMT2-219ENST00000555563 XKR3Q5GH77 459 aa15.41■□□□□ 0.06
SHMT2-219ENST00000555563 LIN28BQ6ZN17 250 aaKnown RBP eCLIP15.41■□□□□ 0.064e-7■□□□□ 9.3
SHMT2-219ENST00000555563 NME8Q8N427 588 aa15.41■□□□□ 0.06
SHMT2-219ENST00000555563 METTL13Q8N6R0 699 aa15.41■□□□□ 0.06
SHMT2-219ENST00000555563 LINC01465Q8N7H1 131 aa15.41■□□□□ 0.06
SHMT2-219ENST00000555563 APBB2Q92870 758 aa15.41■□□□□ 0.06
SHMT2-219ENST00000555563 MTMR9Q96QG7 549 aa15.41■□□□□ 0.06
SHMT2-219ENST00000555563 PPP1R16BQ96T49 567 aa15.41■□□□□ 0.06
SHMT2-219ENST00000555563 CELF4Q9BZC1 486 aaKnown RBP15.41■□□□□ 0.06
SHMT2-219ENST00000555563 ZNF576Q9H609 170 aa15.41■□□□□ 0.06
SHMT2-219ENST00000555563 TTC12Q9H892 705 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-219ENST00000555563 AGO3Q9H9G7 860 aaKnown RBP15.41■□□□□ 0.06
SHMT2-219ENST00000555563 NRBP2Q9NSY0 501 aa15.41■□□□□ 0.06
SHMT2-219ENST00000555563 WRAP73Q9P2S5 460 aaPredicted RBP15.41■□□□□ 0.06
SHMT2-219ENST00000555563 SMC3Q9UQE7 1217 aa15.41■□□□□ 0.06
SHMT2-219ENST00000555563 KDM3AQ9Y4C1 1321 aa15.41■□□□□ 0.06
SHMT2-219ENST00000555563 EVPLQ92817 2033 aa15.4■□□□□ 0.06
SHMT2-219ENST00000555563 MAGEB2O15479 319 aa15.4■□□□□ 0.06
SHMT2-219ENST00000555563 CA3P07451 260 aa15.4■□□□□ 0.06
SHMT2-219ENST00000555563 QARSP47897 775 aaKnown RBP15.4■□□□□ 0.06
SHMT2-219ENST00000555563 NBR1Q14596 966 aa15.4■□□□□ 0.06
SHMT2-219ENST00000555563 EPHA7Q15375 998 aa15.4■□□□□ 0.06
SHMT2-219ENST00000555563 MTERF2Q49AM1 385 aa15.4■□□□□ 0.06
SHMT2-219ENST00000555563 TTC38Q5R3I4 469 aa15.4■□□□□ 0.06
SHMT2-219ENST00000555563 PLA2G4FQ68DD2 849 aa15.4■□□□□ 0.06
SHMT2-219ENST00000555563 ANO5Q75V66 913 aa15.4■□□□□ 0.06
SHMT2-219ENST00000555563 LRRC71Q8N4P6 559 aa15.4■□□□□ 0.06
SHMT2-219ENST00000555563 SH2D3AQ9BRG2 576 aa15.4■□□□□ 0.06
SHMT2-219ENST00000555563 LXNQ9BS40 222 aa15.4■□□□□ 0.06
SHMT2-219ENST00000555563 NIFKQ9BYG3 293 aaKnown RBP15.4■□□□□ 0.06
SHMT2-219ENST00000555563 RGL1Q9NZL6 768 aa15.4■□□□□ 0.06
SHMT2-219ENST00000555563 NOL7Q9UMY1 257 aaKnown RBP15.4■□□□□ 0.06
SHMT2-219ENST00000555563 PCDHA12Q9UN75 941 aa15.4■□□□□ 0.06
SHMT2-219ENST00000555563 GINS2Q9Y248 185 aa15.4■□□□□ 0.06
SHMT2-219ENST00000555563 ZSCAN21Q9Y5A6 473 aaPredicted RBP15.4■□□□□ 0.06
SHMT2-219ENST00000555563 LOXHD1Q8IVV2 1947 aa15.4■□□□□ 0.06
SHMT2-219ENST00000555563 ARID2Q68CP9 1835 aa15.4■□□□□ 0.06
SHMT2-219ENST00000555563 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-219ENST00000555563 TLL1O43897 1013 aa15.39■□□□□ 0.05
SHMT2-219ENST00000555563 AMHP03971 560 aa15.39■□□□□ 0.05
SHMT2-219ENST00000555563 VTNP04004 478 aa15.39■□□□□ 0.05
SHMT2-219ENST00000555563 P4HBP07237 508 aaKnown RBP15.39■□□□□ 0.05
SHMT2-219ENST00000555563 CD52P31358 61 aa15.39■□□□□ 0.05
SHMT2-219ENST00000555563 TXKP42681 527 aa15.39■□□□□ 0.05
SHMT2-219ENST00000555563 TRAPPC10P48553 1259 aa15.39■□□□□ 0.05
SHMT2-219ENST00000555563 CYP4A11Q02928 519 aa15.39■□□□□ 0.05
SHMT2-219ENST00000555563 TBC1D8BQ0IIM8 1120 aa15.39■□□□□ 0.05
SHMT2-219ENST00000555563 ORC2Q13416 577 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-219ENST00000555563 CUL4AQ13619 759 aa15.39■□□□□ 0.05
SHMT2-219ENST00000555563 GRIN2CQ14957 1233 aa15.39■□□□□ 0.05
SHMT2-219ENST00000555563 ZNF174Q15697 407 aa15.39■□□□□ 0.05
SHMT2-219ENST00000555563 PPP2R2DQ66LE6 453 aa15.39■□□□□ 0.05
SHMT2-219ENST00000555563 EFCAB12Q6NXP0 572 aa15.39■□□□□ 0.05
SHMT2-219ENST00000555563 FAM117BQ6P1L5 589 aa15.39■□□□□ 0.05
SHMT2-219ENST00000555563 MYOCDQ8IZQ8 938 aa15.39■□□□□ 0.05
SHMT2-219ENST00000555563 TMEM40Q8WWA1 233 aa15.39■□□□□ 0.05
SHMT2-219ENST00000555563 DYDC2Q96IM9 177 aa15.39■□□□□ 0.05
SHMT2-219ENST00000555563 CEP89Q96ST8 783 aa15.39■□□□□ 0.05
SHMT2-219ENST00000555563 MAP7D2Q96T17 732 aa15.39■□□□□ 0.05
SHMT2-219ENST00000555563 CDX2Q99626 313 aaPredicted RBP15.39■□□□□ 0.05
SHMT2-219ENST00000555563 SLC28A3Q9HAS3 691 aa15.39■□□□□ 0.05
SHMT2-219ENST00000555563 CDHR5Q9HBB8 845 aa15.39■□□□□ 0.05
SHMT2-219ENST00000555563 SQORQ9Y6N5 450 aa15.39■□□□□ 0.05
SHMT2-219ENST00000555563 POTEMA6NI47 508 aa15.38■□□□□ 0.05
SHMT2-219ENST00000555563 DDX11L8A8MPP1 907 aa15.38■□□□□ 0.05
SHMT2-219ENST00000555563 DKC1O60832 514 aaKnown RBP eCLIP15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms