RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 HIRIP3Q9BW71 556 aaPredicted RBP5.92□□□□□ -1.46
SCFD1-216ENST00000555550 AGO3Q9H9G7 860 aaKnown RBP5.92□□□□□ -1.46
SCFD1-216ENST00000555550 SRPK3Q9UPE1 567 aa5.92□□□□□ -1.46
SCFD1-216ENST00000555550 CAPN14A8MX76 684 aa5.91□□□□□ -1.46
SCFD1-216ENST00000555550 RAMP2O60895 175 aa5.91□□□□□ -1.46
SCFD1-216ENST00000555550 CD83Q01151 205 aa5.91□□□□□ -1.46
SCFD1-216ENST00000555550 IFRD2Q12894 506 aaPredicted RBP5.91□□□□□ -1.46
SCFD1-216ENST00000555550 DPY19L2P1Q6NXN4 242 aa5.91□□□□□ -1.46
SCFD1-216ENST00000555550 OTOP2Q7RTS6 562 aa5.91□□□□□ -1.46
SCFD1-216ENST00000555550 PTRH1Q86Y79 214 aaKnown RBP5.91□□□□□ -1.46
SCFD1-216ENST00000555550 TMPRSS6Q8IU80 811 aa5.91□□□□□ -1.46
SCFD1-216ENST00000555550 NLGN4XQ8N0W4 816 aa5.91□□□□□ -1.46
SCFD1-216ENST00000555550 WNK4Q96J92 1243 aa5.91□□□□□ -1.46
SCFD1-216ENST00000555550 CATSPERZQ9NTU4 200 aa5.91□□□□□ -1.46
SCFD1-216ENST00000555550 PFDN2Q9UHV9 154 aa5.91□□□□□ -1.46
SCFD1-216ENST00000555550 FAM184BQ9ULE4 1060 aa5.91□□□□□ -1.46
SCFD1-216ENST00000555550 GIT1Q9Y2X7 761 aa5.91□□□□□ -1.46
SCFD1-216ENST00000555550 MAN2B1O00754 1011 aa5.9□□□□□ -1.46
SCFD1-216ENST00000555550 KCNK3O14649 394 aa5.9□□□□□ -1.46
SCFD1-216ENST00000555550 AMY2AP04746 511 aa5.9□□□□□ -1.46
SCFD1-216ENST00000555550 KRT15P19012 456 aa5.9□□□□□ -1.46
SCFD1-216ENST00000555550 AMY2BP19961 511 aa5.9□□□□□ -1.46
SCFD1-216ENST00000555550 RRP1BQ14684 758 aaKnown RBP5.9□□□□□ -1.46
SCFD1-216ENST00000555550 NBPF6Q5VWK0 638 aa5.9□□□□□ -1.46
SCFD1-216ENST00000555550 TRIM68Q6AZZ1 485 aa5.9□□□□□ -1.46
SCFD1-216ENST00000555550 LRSAM1Q6UWE0 723 aa5.9□□□□□ -1.46
SCFD1-216ENST00000555550 Q6ZPA2 131 aa5.9□□□□□ -1.46
SCFD1-216ENST00000555550 SPATC1Q76KD6 591 aa5.9□□□□□ -1.46
SCFD1-216ENST00000555550 CXXC5Q7LFL8 322 aaKnown RBP5.9□□□□□ -1.46
SCFD1-216ENST00000555550 THEMISQ8N1K5 641 aaPredicted RBP5.9□□□□□ -1.46
SCFD1-216ENST00000555550 NBPF4Q96M43 638 aa5.9□□□□□ -1.46
SCFD1-216ENST00000555550 IPO9Q96P70 1041 aaKnown RBP5.9□□□□□ -1.46
SCFD1-216ENST00000555550 CDC6Q99741 560 aa5.9□□□□□ -1.46
SCFD1-216ENST00000555550 SPATA9Q9BWV2 254 aa5.9□□□□□ -1.46
SCFD1-216ENST00000555550 AMNQ9BXJ7 453 aa5.9□□□□□ -1.46
SCFD1-216ENST00000555550 OR10A2Q9H208 303 aa5.9□□□□□ -1.46
SCFD1-216ENST00000555550 NELFAQ9H3P2 528 aa5.9□□□□□ -1.46
SCFD1-216ENST00000555550 PARPBPQ9NWS1 579 aa5.9□□□□□ -1.46
SCFD1-216ENST00000555550 AURKAIP1Q9NWT8 199 aaPredicted RBP5.9□□□□□ -1.46
SCFD1-216ENST00000555550 UCKL1Q9NWZ5 548 aa5.9□□□□□ -1.46
SCFD1-216ENST00000555550 SIRPGQ9P1W8 387 aa5.9□□□□□ -1.46
SCFD1-216ENST00000555550 FBXO10Q9UK96 956 aa5.9□□□□□ -1.46
SCFD1-216ENST00000555550 ATP23Q9Y6H3 246 aa5.9□□□□□ -1.46
SCFD1-216ENST00000555550 MEOX1P50221 254 aa5.89□□□□□ -1.47
SCFD1-216ENST00000555550 SSRP1Q08945 709 aaKnown RBP5.89□□□□□ -1.47
SCFD1-216ENST00000555550 FSTL1Q12841 308 aa5.89□□□□□ -1.47
SCFD1-216ENST00000555550 STILQ15468 1287 aa5.89□□□□□ -1.47
SCFD1-216ENST00000555550 GPR19Q15760 415 aa5.89□□□□□ -1.47
SCFD1-216ENST00000555550 EP400NLQ6ZTU2 488 aa5.89□□□□□ -1.47
SCFD1-216ENST00000555550 ADGRE4PQ86SQ3 457 aa5.89□□□□□ -1.47
SCFD1-216ENST00000555550 ULK2Q8IYT8 1036 aa5.89□□□□□ -1.47
SCFD1-216ENST00000555550 RTKN2Q8IZC4 609 aa5.89□□□□□ -1.47
SCFD1-216ENST00000555550 SHCBP1Q8NEM2 672 aa5.89□□□□□ -1.47
SCFD1-216ENST00000555550 ZNF669Q96BR6 464 aaPredicted RBP5.89□□□□□ -1.47
SCFD1-216ENST00000555550 BTBD7Q9P203 1132 aa5.89□□□□□ -1.47
SCFD1-216ENST00000555550 MSRB2Q9Y3D2 182 aa5.89□□□□□ -1.47
SCFD1-216ENST00000555550 PCDHA8Q9Y5H6 950 aa5.89□□□□□ -1.47
SCFD1-216ENST00000555550 A0A0G2JNJ9 132 aa5.88□□□□□ -1.47
SCFD1-216ENST00000555550 PRAMEF25A6NGN4 478 aa5.88□□□□□ -1.47
SCFD1-216ENST00000555550 RPS6KA4O75676 772 aa5.88□□□□□ -1.47
SCFD1-216ENST00000555550 PYGMP11217 842 aa5.88□□□□□ -1.47
SCFD1-216ENST00000555550 AOAHP28039 575 aa5.88□□□□□ -1.47
SCFD1-216ENST00000555550 STAT5BP51692 787 aa5.88□□□□□ -1.47
SCFD1-216ENST00000555550 JAM2P57087 298 aa5.88□□□□□ -1.47
SCFD1-216ENST00000555550 HGFACQ04756 655 aa5.88□□□□□ -1.47
SCFD1-216ENST00000555550 HNRNPA0Q13151 305 aaKnown RBP5.88□□□□□ -1.47
SCFD1-216ENST00000555550 PAK1Q13153 545 aa5.88□□□□□ -1.47
SCFD1-216ENST00000555550 CRHR2Q13324 411 aa5.88□□□□□ -1.47
SCFD1-216ENST00000555550 RASGRF1Q13972 1273 aa5.88□□□□□ -1.47
SCFD1-216ENST00000555550 SF3A1Q15459 793 aaKnown RBP5.88□□□□□ -1.47
SCFD1-216ENST00000555550 DPH6Q7L8W6 267 aa5.88□□□□□ -1.47
SCFD1-216ENST00000555550 BTBD2Q9BX70 525 aa5.88□□□□□ -1.47
SCFD1-216ENST00000555550 CCDC113Q9H0I3 377 aa5.88□□□□□ -1.47
SCFD1-216ENST00000555550 Q9UFV3 132 aa5.88□□□□□ -1.47
SCFD1-216ENST00000555550 SH3BP1Q9Y3L3 701 aa5.88□□□□□ -1.47
SCFD1-216ENST00000555550 KRTAP23-1A1A580 65 aa5.87□□□□□ -1.47
SCFD1-216ENST00000555550 SLC26A4O43511 780 aa5.87□□□□□ -1.47
SCFD1-216ENST00000555550 MPIG6BO95866 241 aa5.87□□□□□ -1.47
SCFD1-216ENST00000555550 C4BPAP04003 597 aaKnown RBP5.87□□□□□ -1.47
SCFD1-216ENST00000555550 SRGAP2CP0DJJ0 459 aa5.87□□□□□ -1.47
SCFD1-216ENST00000555550 BMP5P22003 454 aa5.87□□□□□ -1.47
SCFD1-216ENST00000555550 GJA4P35212 333 aa5.87□□□□□ -1.47
SCFD1-216ENST00000555550 STAT3P40763 770 aa5.87□□□□□ -1.47
SCFD1-216ENST00000555550 ECE1P42892 770 aa5.87□□□□□ -1.47
SCFD1-216ENST00000555550 SLC25A3Q00325 362 aa5.87□□□□□ -1.47
SCFD1-216ENST00000555550 MOGSQ13724 837 aa5.87□□□□□ -1.47
SCFD1-216ENST00000555550 ACAP1Q15027 740 aa5.87□□□□□ -1.47
SCFD1-216ENST00000555550 WDR48Q8TAF3 677 aa5.87□□□□□ -1.47
SCFD1-216ENST00000555550 PMFBP1Q8TBY8 1022 aa5.87□□□□□ -1.47
SCFD1-216ENST00000555550 ARMC5Q96C12 935 aa5.87□□□□□ -1.47
SCFD1-216ENST00000555550 CBLCQ9ULV8 474 aa5.87□□□□□ -1.47
SCFD1-216ENST00000555550 KDM2BQ8NHM5 1336 aa5.86□□□□□ -1.47
SCFD1-216ENST00000555550 FOXN1O15353 648 aa5.86□□□□□ -1.47
SCFD1-216ENST00000555550 COL10A1Q03692 680 aa5.86□□□□□ -1.47
SCFD1-216ENST00000555550 SEC23AQ15436 765 aa5.86□□□□□ -1.47
SCFD1-216ENST00000555550 KANK2Q63ZY3 851 aa5.86□□□□□ -1.47
SCFD1-216ENST00000555550 LAIR1Q6GTX8 287 aa5.86□□□□□ -1.47
SCFD1-216ENST00000555550 RPUSD2Q8IZ73 545 aaKnown RBP5.86□□□□□ -1.47
SCFD1-216ENST00000555550 PCDH19Q8TAB3 1148 aa5.86□□□□□ -1.47
SCFD1-216ENST00000555550 FBXW5Q969U6 566 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms