RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 P2RX5Q93086 422 aa12.97□□□□□ -0.33
VPS33B-204ENST00000554660 SENP7Q9BQF6 1050 aa12.97□□□□□ -0.33
VPS33B-204ENST00000554660 MYL10Q9BUA6 226 aa12.97□□□□□ -0.33
VPS33B-204ENST00000554660 U3KPZ7 1027 aaPredicted RBP12.97□□□□□ -0.33
VPS33B-204ENST00000554660 KMT2EQ8IZD2 1858 aa12.97□□□□□ -0.33
VPS33B-204ENST00000554660 TTC3P53804 2025 aa12.96□□□□□ -0.33
VPS33B-204ENST00000554660 PLXNA4Q9HCM2 1894 aa12.96□□□□□ -0.33
VPS33B-204ENST00000554660 GSTTP1A0A1W2PQM5 241 aa12.96□□□□□ -0.33
VPS33B-204ENST00000554660 ERICH2A1L162 156 aa12.96□□□□□ -0.33
VPS33B-204ENST00000554660 MBLAC1A4D2B0 266 aaPredicted RBP12.96□□□□□ -0.33
VPS33B-204ENST00000554660 MEIS2O14770 477 aa12.96□□□□□ -0.33
VPS33B-204ENST00000554660 EYA4O95677 639 aa12.96□□□□□ -0.33
VPS33B-204ENST00000554660 CYP21A2P08686 494 aa12.96□□□□□ -0.33
VPS33B-204ENST00000554660 ITGB5P18084 799 aa12.96□□□□□ -0.33
VPS33B-204ENST00000554660 RPS6KB1P23443 525 aa12.96□□□□□ -0.33
VPS33B-204ENST00000554660 GJB2P29033 226 aa12.96□□□□□ -0.33
VPS33B-204ENST00000554660 BLOC1S2Q6QNY1 142 aa12.96□□□□□ -0.33
VPS33B-204ENST00000554660 RALYLQ86SE5 291 aaKnown RBP12.96□□□□□ -0.33
VPS33B-204ENST00000554660 NPAS4Q8IUM7 802 aa12.96□□□□□ -0.33
VPS33B-204ENST00000554660 EFHBQ8N7U6 833 aa12.96□□□□□ -0.33
VPS33B-204ENST00000554660 SPPL3Q8TCT6 385 aa12.96□□□□□ -0.33
VPS33B-204ENST00000554660 GLG1Q92896 1179 aa12.96□□□□□ -0.33
VPS33B-204ENST00000554660 CUL5Q93034 780 aa12.96□□□□□ -0.33
VPS33B-204ENST00000554660 PPP2R3CQ969Q6 453 aa12.96□□□□□ -0.33
VPS33B-204ENST00000554660 PBXIP1Q96AQ6 731 aa12.96□□□□□ -0.33
VPS33B-204ENST00000554660 SNX27Q96L92 541 aa12.96□□□□□ -0.33
VPS33B-204ENST00000554660 FUCA2Q9BTY2 467 aa12.96□□□□□ -0.33
VPS33B-204ENST00000554660 ERAP1Q9NZ08 941 aa12.96□□□□□ -0.33
VPS33B-204ENST00000554660 USP15Q9Y4E8 981 aaPredicted RBP12.96□□□□□ -0.33
VPS33B-204ENST00000554660 LOC730098B7Z3J9 87 aa12.95□□□□□ -0.34
VPS33B-204ENST00000554660 HMGB1P09429 215 aaKnown RBP12.95□□□□□ -0.34
VPS33B-204ENST00000554660 PTPN5P54829 565 aa12.95□□□□□ -0.34
VPS33B-204ENST00000554660 KRT85P78386 507 aa12.95□□□□□ -0.34
VPS33B-204ENST00000554660 RBM10P98175 930 aaKnown RBP12.95□□□□□ -0.34
VPS33B-204ENST00000554660 TCF15Q12870 199 aa12.95□□□□□ -0.34
VPS33B-204ENST00000554660 XRRA1Q6P2D8 792 aa12.95□□□□□ -0.34
VPS33B-204ENST00000554660 BMP8AQ7Z5Y6 402 aa12.95□□□□□ -0.34
VPS33B-204ENST00000554660 RTN4RL1Q86UN2 441 aaPredicted RBP12.95□□□□□ -0.34
VPS33B-204ENST00000554660 SUGP1Q8IWZ8 645 aaKnown RBP12.95□□□□□ -0.34
VPS33B-204ENST00000554660 CRIPAKQ8N1N5 446 aa12.95□□□□□ -0.34
VPS33B-204ENST00000554660 GIMAP8Q8ND71 665 aaPredicted RBP12.95□□□□□ -0.34
VPS33B-204ENST00000554660 TRAPPC12Q8WVT3 735 aa12.95□□□□□ -0.34
VPS33B-204ENST00000554660 SEPT1Q8WYJ6 367 aa12.95□□□□□ -0.34
VPS33B-204ENST00000554660 GPRASP2Q96D09 838 aa12.95□□□□□ -0.34
VPS33B-204ENST00000554660 SCAND2PQ9GZW5 306 aaPredicted RBP12.95□□□□□ -0.34
VPS33B-204ENST00000554660 FAM86C1Q9NVL1 165 aa12.95□□□□□ -0.34
VPS33B-204ENST00000554660 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.95□□□□□ -0.34
VPS33B-204ENST00000554660 PIK3CDO00329 1044 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 PPFIA3O75145 1194 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 GADD45BO75293 160 aaPredicted RBP12.94□□□□□ -0.34
VPS33B-204ENST00000554660 CAVIN2O95810 425 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 SCG2P13521 617 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 INSRRP14616 1297 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 ANTXR2P58335 489 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 ZXDAP98168 799 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 COASYQ13057 564 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 PAK2Q13177 524 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 MTMR1Q13613 665 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 SART3Q15020 963 aaKnown RBP12.94□□□□□ -0.34
VPS33B-204ENST00000554660 UBE2SQ16763 222 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 ME3Q16798 604 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 TMEM266Q2M3C6 531 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 ADCK5Q3MIX3 580 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 CATIPQ7Z7H3 387 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 CCDC83Q8IWF9 413 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 RRP36Q96EU6 259 aaKnown RBP12.94□□□□□ -0.34
VPS33B-204ENST00000554660 RPGRIP1Q96KN7 1286 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 MAP7D2Q96T17 732 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 PCYT2Q99447 389 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 LLPHQ9BRT6 129 aaKnown RBP12.94□□□□□ -0.34
VPS33B-204ENST00000554660 SPZ1Q9BXG8 430 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 HCSTQ9UBK5 93 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 SEC63Q9UGP8 760 aaKnown RBP12.94□□□□□ -0.34
VPS33B-204ENST00000554660 USP25Q9UHP3 1055 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 PADI3Q9ULW8 664 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 TRPV2Q9Y5S1 764 aa12.94□□□□□ -0.34
VPS33B-204ENST00000554660 IGSF9BQ9UPX0 1349 aa12.93□□□□□ -0.34
VPS33B-204ENST00000554660 KAT6AQ92794 2004 aa12.93□□□□□ -0.34
VPS33B-204ENST00000554660 E7EWF7 191 aa12.93□□□□□ -0.34
VPS33B-204ENST00000554660 M0QZ92 97 aa12.93□□□□□ -0.34
VPS33B-204ENST00000554660 PER2O15055 1255 aa12.93□□□□□ -0.34
VPS33B-204ENST00000554660 PLEKHA8P1O95397 391 aa12.93□□□□□ -0.34
VPS33B-204ENST00000554660 VCPP55072 806 aaKnown RBP12.93□□□□□ -0.34
VPS33B-204ENST00000554660 ST3GAL1Q11201 340 aa12.93□□□□□ -0.34
VPS33B-204ENST00000554660 CBX2Q14781 532 aaPredicted RBP12.93□□□□□ -0.34
VPS33B-204ENST00000554660 NAALADL2Q58DX5 795 aa12.93□□□□□ -0.34
VPS33B-204ENST00000554660 FOXD4L5Q5VV16 416 aaPredicted RBP12.93□□□□□ -0.34
VPS33B-204ENST00000554660 IER5Q5VY09 327 aa12.93□□□□□ -0.34
VPS33B-204ENST00000554660 ATL3Q6DD88 541 aa12.93□□□□□ -0.34
VPS33B-204ENST00000554660 MTERF4Q7Z6M4 381 aaKnown RBP12.93□□□□□ -0.34
VPS33B-204ENST00000554660 FBXL6Q8N531 539 aa12.93□□□□□ -0.34
VPS33B-204ENST00000554660 VN1R2Q8NFZ6 395 aa12.93□□□□□ -0.34
VPS33B-204ENST00000554660 NCOA7Q8NI08 942 aa12.93□□□□□ -0.34
VPS33B-204ENST00000554660 CTCFLQ8NI51 663 aaPredicted RBP12.93□□□□□ -0.34
VPS33B-204ENST00000554660 FOXD4L4Q8WXT5 416 aaPredicted RBP12.93□□□□□ -0.34
VPS33B-204ENST00000554660 CDHR1Q96JP9 859 aa12.93□□□□□ -0.34
VPS33B-204ENST00000554660 FTHL17Q9BXU8 183 aa12.93□□□□□ -0.34
VPS33B-204ENST00000554660 TMX1Q9H3N1 280 aa12.93□□□□□ -0.34
VPS33B-204ENST00000554660 SMARCAD1Q9H4L7 1026 aa12.93□□□□□ -0.34
VPS33B-204ENST00000554660 TRPC6Q9Y210 931 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms