RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 NR1D1P20393 614 aa13.39□□□□□ -0.27
SHMT2-207ENST00000553837 PAFAH1B1P43034 410 aa13.39□□□□□ -0.27
SHMT2-207ENST00000553837 SLC12A3P55017 1021 aa13.39□□□□□ -0.27
SHMT2-207ENST00000553837 PRR16Q569H4 304 aa13.39□□□□□ -0.27
SHMT2-207ENST00000553837 CCDC181Q5TID7 509 aa13.39□□□□□ -0.27
SHMT2-207ENST00000553837 AP1ARQ63HQ0 302 aa13.39□□□□□ -0.27
SHMT2-207ENST00000553837 C6orf89Q6UWU4 347 aa13.39□□□□□ -0.27
SHMT2-207ENST00000553837 CATSPER3Q86XQ3 398 aa13.39□□□□□ -0.27
SHMT2-207ENST00000553837 CEP57Q86XR8 500 aa13.39□□□□□ -0.27
SHMT2-207ENST00000553837 C3orf20Q8ND61 904 aa13.39□□□□□ -0.27
SHMT2-207ENST00000553837 GMCL1P1Q8NEA9 526 aa13.39□□□□□ -0.27
SHMT2-207ENST00000553837 CYP2W1Q8TAV3 490 aa13.39□□□□□ -0.27
SHMT2-207ENST00000553837 SCFD1Q8WVM8 642 aa13.39□□□□□ -0.27
SHMT2-207ENST00000553837 ETAA1Q9NY74 926 aa13.39□□□□□ -0.27
SHMT2-207ENST00000553837 ABCB11O95342 1321 aa13.39□□□□□ -0.27
SHMT2-207ENST00000553837 H0YIN7 160 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 MEIS1O00470 390 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 NOL4O94818 638 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 KRT14P02533 472 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 SPATA31C1P0DKV0 1188 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 HOXA13P31271 388 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-207ENST00000553837 EIF4A3P38919 411 aaKnown RBP13.38□□□□□ -0.27
SHMT2-207ENST00000553837 MATR3P43243 847 aaKnown RBP eCLIP13.38□□□□□ -0.27
SHMT2-207ENST00000553837 CASP5P51878 434 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 INHBEP58166 350 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 SPA17Q15506 151 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 STYK1Q6J9G0 422 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 SLC30A10Q6XR72 485 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 RRAGAQ7L523 313 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 SPICE1Q8N0Z3 855 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 GMCL1Q96IK5 515 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 SH3GL3Q99963 347 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 AMNQ9BXJ7 453 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 LRRC27Q9C0I9 530 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 NT5C3AQ9H0P0 336 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 NUCKS1Q9H1E3 243 aaKnown RBP13.38□□□□□ -0.27
SHMT2-207ENST00000553837 KCTD10Q9H3F6 313 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 KDM3AQ9Y4C1 1321 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 HMGB1P1B2RPK0 211 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-207ENST00000553837 TRAF5O00463 557 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 NPM3O75607 178 aaKnown RBP13.38□□□□□ -0.27
SHMT2-207ENST00000553837 SLC8A1P32418 973 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 IFFO1Q0D2I5 559 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 SYDE2Q5VT97 1194 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 HAUS3Q68CZ6 603 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 NAIF1Q69YI7 327 aaPredicted RBP13.38□□□□□ -0.27
SHMT2-207ENST00000553837 C8orf74Q6P047 294 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 CYB5D1Q6P9G0 228 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 CCDC42Q96M95 316 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 CCDC43Q96MW1 224 aaKnown RBP13.38□□□□□ -0.27
SHMT2-207ENST00000553837 PAIP2Q9BPZ3 127 aaKnown RBP13.38□□□□□ -0.27
SHMT2-207ENST00000553837 MLXIPQ9HAP2 919 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 DDX20Q9UHI6 824 aaKnown RBP13.38□□□□□ -0.27
SHMT2-207ENST00000553837 COL4A3BPQ9Y5P4 624 aa13.38□□□□□ -0.27
SHMT2-207ENST00000553837 ATRNL1Q5VV63 1379 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 FRMD3A2A2Y4 597 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 ZNF233A6NK53 670 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 E7EVH7 732 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 ECE1P42892 770 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 FKBP3Q00688 224 aaKnown RBP13.37□□□□□ -0.27
SHMT2-207ENST00000553837 AP3B2Q13367 1082 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 HERC4Q5GLZ8 1057 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-207ENST00000553837 FOXR2Q6PJQ5 311 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 TAX1BP1Q86VP1 789 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 FBXO11Q86XK2 927 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 MREGQ8N565 214 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 ARFGAP2Q8N6H7 521 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 TATDN2Q93075 761 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 ATP6V1G3Q96LB4 118 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 OSBPL9Q96SU4 736 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 TSG101Q99816 390 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 GLT8D2Q9H1C3 349 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 POLD4Q9HCU8 107 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 HYOU1Q9Y4L1 999 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 PCDHA13Q9Y5I0 950 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 CAPN6Q9Y6Q1 641 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 TLR2O60603 784 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 FGFR1OPO95684 399 aaKnown RBP13.37□□□□□ -0.27
SHMT2-207ENST00000553837 HOXD13P35453 343 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 KIF11P52732 1056 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 SEC24CP53992 1094 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 PAK2Q13177 524 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 ASTE1Q2TB18 679 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-207ENST00000553837 Q4G0T1 1027 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 ZC3H12AQ5D1E8 599 aaKnown RBP13.37□□□□□ -0.27
SHMT2-207ENST00000553837 HGSNATQ68CP4 663 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 PDXDC1Q6P996 788 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 FUKQ8N0W3 1084 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 FLAD1Q8NFF5 587 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 TBC1D5Q92609 795 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 NAP1L4Q99733 375 aaKnown RBP13.37□□□□□ -0.27
SHMT2-207ENST00000553837 FRMD4AQ9P2Q2 1039 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-207ENST00000553837 SALL4Q9UJQ4 1053 aa13.37□□□□□ -0.27
SHMT2-207ENST00000553837 MSH4O15457 936 aa13.36□□□□□ -0.27
SHMT2-207ENST00000553837 LCA5LO95447 670 aa13.36□□□□□ -0.27
SHMT2-207ENST00000553837 BMP3P12645 472 aa13.36□□□□□ -0.27
SHMT2-207ENST00000553837 POLD1P28340 1107 aa13.36□□□□□ -0.27
SHMT2-207ENST00000553837 SREBF1P36956 1147 aa13.36□□□□□ -0.27
SHMT2-207ENST00000553837 CLNS1AP54105 237 aaKnown RBP13.36□□□□□ -0.27
SHMT2-207ENST00000553837 GRIK3Q13003 919 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms