RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 SGSM2O43147 1006 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 PRC1O43663 620 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 PDGFBP01127 241 aaPredicted RBP10.38□□□□□ -0.75
SYNE2-209ENST00000553308 ARP10275 920 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 FGFR1P11362 822 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 KLRC1P26715 233 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 AVPR2P30518 371 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 GNAQP50148 359 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 STAT5BP51692 787 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 ITGB3BPQ13352 177 aaPredicted RBP10.38□□□□□ -0.75
SYNE2-209ENST00000553308 KCNC3Q14003 757 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 PLPP4Q5VZY2 271 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 CASC1Q6TDU7 716 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 PLPPR4Q7Z2D5 763 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 HEATR3Q7Z4Q2 680 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 NME8Q8N427 588 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 CCDC82Q8N4S0 544 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 PPP1R16BQ96T49 567 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 CDCA3Q99618 268 aaPredicted RBP10.38□□□□□ -0.75
SYNE2-209ENST00000553308 MXRA8Q9BRK3 442 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 SDF4Q9BRK5 362 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 S1PR5Q9H228 398 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 AAASQ9NRG9 546 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 TYW1Q9NV66 732 aaKnown RBP10.38□□□□□ -0.75
SYNE2-209ENST00000553308 TMEM260Q9NX78 707 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 CDH22Q9UJ99 828 aa10.38□□□□□ -0.75
SYNE2-209ENST00000553308 RBM8AQ9Y5S9 174 aaKnown RBP10.38□□□□□ -0.75
SYNE2-209ENST00000553308 CCDC69A6NI79 296 aa10.37□□□□□ -0.75
SYNE2-209ENST00000553308 RPS6KA5O75582 802 aa10.37□□□□□ -0.75
SYNE2-209ENST00000553308 CCNE2O96020 404 aa10.37□□□□□ -0.75
SYNE2-209ENST00000553308 TECP42680 631 aa10.37□□□□□ -0.75
SYNE2-209ENST00000553308 PLXNA3P51805 1871 aa10.37□□□□□ -0.75
SYNE2-209ENST00000553308 ANKRD54Q6NXT1 300 aa10.37□□□□□ -0.75
SYNE2-209ENST00000553308 LLGL2Q6P1M3 1020 aa10.37□□□□□ -0.75
SYNE2-209ENST00000553308 SYCE2Q6PIF2 218 aa10.37□□□□□ -0.75
SYNE2-209ENST00000553308 TMTC3Q6ZXV5 915 aa10.37□□□□□ -0.75
SYNE2-209ENST00000553308 SLC24A5Q71RS6 500 aa10.37□□□□□ -0.75
SYNE2-209ENST00000553308 KIAA0319LQ8IZA0 1049 aa10.37□□□□□ -0.75
SYNE2-209ENST00000553308 MAP4K1Q92918 833 aa10.37□□□□□ -0.75
SYNE2-209ENST00000553308 TNPO1Q92973 898 aaKnown RBP10.37□□□□□ -0.75
SYNE2-209ENST00000553308 TCF25Q9BQ70 676 aa10.37□□□□□ -0.75
SYNE2-209ENST00000553308 CWH43Q9H720 699 aa10.37□□□□□ -0.75
SYNE2-209ENST00000553308 AGO4Q9HCK5 861 aaKnown RBP10.37□□□□□ -0.75
SYNE2-209ENST00000553308 RGS18Q9NS28 235 aa10.37□□□□□ -0.75
SYNE2-209ENST00000553308 C1orf112Q9NSG2 853 aa10.37□□□□□ -0.75
SYNE2-209ENST00000553308 ST3GAL5Q9UNP4 418 aa10.37□□□□□ -0.75
SYNE2-209ENST00000553308 TRIOO75962 3097 aa10.37□□□□□ -0.75
SYNE2-209ENST00000553308 ZDBF2Q9HCK1 2354 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 IGKV6D-21A0A0A0MT36 114 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 FSD2A1L4K1 749 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 HIDE1A8MVS5 230 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 H0Y858 1186 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 DDX39AO00148 427 aaKnown RBP10.36□□□□□ -0.75
SYNE2-209ENST00000553308 BACH1O14867 736 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 HBP1O60381 514 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 ATG7O95352 703 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 SRGAP2BP0DMP2 458 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 LAG3P18627 525 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 PBX3P40426 434 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 KIZQ2M2Z5 673 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 WWC2Q6AWC2 1192 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 PDE12Q6L8Q7 609 aaKnown RBP10.36□□□□□ -0.75
SYNE2-209ENST00000553308 TYW1BQ6NUM6 668 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 TMEM184AQ6ZMB5 413 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 ZBTB33Q86T24 672 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 FAM228AQ86W67 206 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 MICU3Q86XE3 530 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 CCDC60Q8IWA6 550 aaPredicted RBP10.36□□□□□ -0.75
SYNE2-209ENST00000553308 MRPS27Q92552 414 aaKnown RBP10.36□□□□□ -0.75
SYNE2-209ENST00000553308 ATOH1Q92858 354 aaPredicted RBP10.36□□□□□ -0.75
SYNE2-209ENST00000553308 TMEM87BQ96K49 555 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 OSMRQ99650 979 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 MTA3Q9BTC8 594 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 LRRC2Q9BYS8 371 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 ANO3Q9BYT9 981 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 ENTPD7Q9NQZ7 604 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 TMEM161AQ9NX61 479 aa10.36□□□□□ -0.75
SYNE2-209ENST00000553308 CNTNAP5Q8WYK1 1306 aa10.35□□□□□ -0.75
SYNE2-209ENST00000553308 ZBTB42B2RXF5 422 aa10.35□□□□□ -0.75
SYNE2-209ENST00000553308 GPR182O15218 404 aa10.35□□□□□ -0.75
SYNE2-209ENST00000553308 CALM1P0DP23 149 aa10.35□□□□□ -0.75
SYNE2-209ENST00000553308 CALM2P0DP24 149 aa10.35□□□□□ -0.75
SYNE2-209ENST00000553308 CALM3P0DP25 149 aa10.35□□□□□ -0.75
SYNE2-209ENST00000553308 MCM5P33992 734 aa10.35□□□□□ -0.75
SYNE2-209ENST00000553308 SLC26A2P50443 739 aa10.35□□□□□ -0.75
SYNE2-209ENST00000553308 PLCB3Q01970 1234 aa10.35□□□□□ -0.75
SYNE2-209ENST00000553308 DSC3Q14574 896 aa10.35□□□□□ -0.75
SYNE2-209ENST00000553308 CEP55Q53EZ4 464 aa10.35□□□□□ -0.75
SYNE2-209ENST00000553308 ABHD15Q6UXT9 468 aa10.35□□□□□ -0.75
SYNE2-209ENST00000553308 LRRC55Q6ZSA7 311 aa10.35□□□□□ -0.75
SYNE2-209ENST00000553308 TMTC2Q8N394 836 aa10.35□□□□□ -0.75
SYNE2-209ENST00000553308 FANCBQ8NB91 859 aa10.35□□□□□ -0.75
SYNE2-209ENST00000553308 KREMEN2Q8NCW0 462 aa10.35□□□□□ -0.75
SYNE2-209ENST00000553308 RASGRP4Q8TDF6 673 aa10.35□□□□□ -0.75
SYNE2-209ENST00000553308 RIPOR3Q96MK2 946 aa10.35□□□□□ -0.75
SYNE2-209ENST00000553308 SMOC2Q9H3U7 446 aa10.35□□□□□ -0.75
SYNE2-209ENST00000553308 ATP6V0A4Q9HBG4 840 aa10.35□□□□□ -0.75
SYNE2-209ENST00000553308 TSHZ2Q9NRE2 1034 aa10.35□□□□□ -0.75
SYNE2-209ENST00000553308 RNF19AQ9NV58 838 aa10.35□□□□□ -0.75
SYNE2-209ENST00000553308 LZTS1Q9Y250 596 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms