RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 REEP2Q9BRK0 252 aa17.63■□□□□ 0.41
CUX1-213ENST00000549414 TMEM39BQ9GZU3 492 aa17.63■□□□□ 0.41
CUX1-213ENST00000549414 FEZ2Q9UHY8 353 aaPredicted RBP17.63■□□□□ 0.41
CUX1-213ENST00000549414 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.63■□□□□ 0.412e-7■□□□□ 10.7
CUX1-213ENST00000549414 MYO3BQ8WXR4 1341 aa17.63■□□□□ 0.41
CUX1-213ENST00000549414 KDM4FA0A1W2PPD8 638 aa17.63■□□□□ 0.41
CUX1-213ENST00000549414 EIF3CLB5ME19 914 aaKnown RBP17.63■□□□□ 0.41
CUX1-213ENST00000549414 IFNAR2P48551 515 aa17.63■□□□□ 0.41
CUX1-213ENST00000549414 SLC8A3P57103 927 aa17.63■□□□□ 0.41
CUX1-213ENST00000549414 RIC1Q4ADV7 1423 aa17.63■□□□□ 0.41
CUX1-213ENST00000549414 SCARA5Q6ZMJ2 495 aa17.63■□□□□ 0.41
CUX1-213ENST00000549414 FBXL16Q8N461 479 aa17.63■□□□□ 0.41
CUX1-213ENST00000549414 EIF3CQ99613 913 aaKnown RBP17.63■□□□□ 0.41
CUX1-213ENST00000549414 FBXO28Q9NVF7 368 aa17.63■□□□□ 0.41
CUX1-213ENST00000549414 PIK3C2AO00443 1686 aa17.63■□□□□ 0.41
CUX1-213ENST00000549414 PEAK1Q9H792 1746 aa17.63■□□□□ 0.41
CUX1-213ENST00000549414 GOLGA8KD6RF30 607 aa17.63■□□□□ 0.41
CUX1-213ENST00000549414 DHX9Q08211 1270 aaKnown RBP17.63■□□□□ 0.41
CUX1-213ENST00000549414 GLYCTKQ8IVS8 523 aa17.63■□□□□ 0.41
CUX1-213ENST00000549414 XXYLT1Q8NBI6 393 aa17.63■□□□□ 0.41
CUX1-213ENST00000549414 SLC10A4Q96EP9 437 aa17.63■□□□□ 0.41
CUX1-213ENST00000549414 DNAJC17Q9NVM6 304 aaKnown RBP17.63■□□□□ 0.41
CUX1-213ENST00000549414 SPATA31A6Q5VVP1 1343 aa17.63■□□□□ 0.41
CUX1-213ENST00000549414 TAL1P17542 331 aaPredicted RBP17.62■□□□□ 0.41
CUX1-213ENST00000549414 FAM160B1Q5W0V3 765 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 NYAP1Q6ZVC0 841 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 TSNARE1Q96NA8 513 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 NYAP2Q9P242 653 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 MON2Q7Z3U7 1717 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 SLCO1A2P46721 670 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 DRAP1Q14919 205 aaPredicted RBP17.62■□□□□ 0.41
CUX1-213ENST00000549414 PPP2R5AQ15172 486 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 RNF34Q969K3 372 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 CDHR1Q96JP9 859 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 NLRP4Q96MN2 994 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 OSBPL9Q96SU4 736 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 STIM2Q9P246 746 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 DLG5Q8TDM6 1919 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 DAPK3O43293 454 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 PSAPP07602 524 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 QARSP47897 775 aaKnown RBP17.62■□□□□ 0.41
CUX1-213ENST00000549414 ZNF211Q13398 564 aaPredicted RBP17.62■□□□□ 0.41
CUX1-213ENST00000549414 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.62■□□□□ 0.41
CUX1-213ENST00000549414 GABBR1Q9UBS5 961 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 FAM169AQ9Y6X4 670 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 A0A087X0B3 334 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 DENND3A2RUS2 1198 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 WDR64B1ANS9 1081 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 ATP5DP30049 168 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 VSNL1P62760 191 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 DMTNQ08495 405 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 CCDC6Q16204 474 aa17.62■□□□□ 0.41
CUX1-213ENST00000549414 SWSAP1Q6NVH7 229 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 PDXDC1Q6P996 788 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 TAOK1Q7L7X3 1001 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 CTAGE3PQ8IX95 158 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 GPATCH11Q8N954 259 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 SMARCAL1Q9NZC9 954 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 AKT3Q9Y243 479 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 ZC2HC1CQ53FD0 456 aaPredicted RBP17.61■□□□□ 0.41
CUX1-213ENST00000549414 CASC4Q6P4E1 433 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 INTS8Q75QN2 995 aaKnown RBP17.61■□□□□ 0.41
CUX1-213ENST00000549414 APBB1IPQ7Z5R6 666 aaPredicted RBP17.61■□□□□ 0.41
CUX1-213ENST00000549414 COL23A1Q86Y22 540 aaPredicted RBP17.61■□□□□ 0.41
CUX1-213ENST00000549414 MKRN1Q9UHC7 482 aaKnown RBP17.61■□□□□ 0.41
CUX1-213ENST00000549414 ANKRD65E5RJM6 399 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 HIP1RO75146 1068 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 MYBP10242 640 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 HMGCS2P54868 508 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 CLUL1Q15846 466 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 PPP2R5EQ16537 467 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 THNSL1Q8IYQ7 743 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 ACER1Q8TDN7 264 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 MAIP1Q8WWC4 291 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 ADPGKQ9BRR6 497 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 SLC5A4Q9NY91 659 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 PARP2Q9UGN5 583 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 TTLL3Q9Y4R7 772 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 M0QZ92 97 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 P4HBP07237 508 aaKnown RBP17.61■□□□□ 0.41
CUX1-213ENST00000549414 ECE1P42892 770 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 PRMT6Q96LA8 375 aaPredicted RBP17.61■□□□□ 0.41
CUX1-213ENST00000549414 FAM213AQ9BRX8 229 aa17.61■□□□□ 0.41
CUX1-213ENST00000549414 SETDB1Q15047 1291 aa17.6■□□□□ 0.41
CUX1-213ENST00000549414 SGO2Q562F6 1265 aa17.6■□□□□ 0.41
CUX1-213ENST00000549414 SLC30A10Q6XR72 485 aa17.6■□□□□ 0.41
CUX1-213ENST00000549414 CYFIP1Q7L576 1253 aa17.6■□□□□ 0.41
CUX1-213ENST00000549414 DDX47Q9H0S4 455 aaKnown RBP17.6■□□□□ 0.41
CUX1-213ENST00000549414 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP17.6■□□□□ 0.41
CUX1-213ENST00000549414 STAM2O75886 525 aa17.6■□□□□ 0.41
CUX1-213ENST00000549414 CSPG5O95196 566 aa17.6■□□□□ 0.41
CUX1-213ENST00000549414 BPIFB4P59827 614 aa17.6■□□□□ 0.41
CUX1-213ENST00000549414 TERF2Q15554 542 aa17.6■□□□□ 0.41
CUX1-213ENST00000549414 PASD1Q8IV76 773 aa17.6■□□□□ 0.41
CUX1-213ENST00000549414 RSAD2Q8WXG1 361 aa17.6■□□□□ 0.41
CUX1-213ENST00000549414 ZNF233A6NK53 670 aa17.6■□□□□ 0.41
CUX1-213ENST00000549414 EYA4O95677 639 aa17.6■□□□□ 0.41
CUX1-213ENST00000549414 SLURP2P0DP57 97 aa17.6■□□□□ 0.41
CUX1-213ENST00000549414 KCNJ6P48051 423 aa17.6■□□□□ 0.41
CUX1-213ENST00000549414 MTMR2Q13614 643 aa17.6■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 15 ms