RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 MRPL11Q9Y3B7 192 aaKnown RBP9.54□□□□□ -0.88
VPS29-203ENST00000546588 RABGAP1Q9Y3P9 1069 aa9.54□□□□□ -0.88
VPS29-203ENST00000546588 ZHX2Q9Y6X8 837 aa9.54□□□□□ -0.88
VPS29-203ENST00000546588 FSD2A1L4K1 749 aa9.53□□□□□ -0.88
VPS29-203ENST00000546588 TBX3O15119 743 aa9.53□□□□□ -0.88
VPS29-203ENST00000546588 SLC26A4O43511 780 aa9.53□□□□□ -0.88
VPS29-203ENST00000546588 LETM1O95202 739 aaPredicted RBP9.53□□□□□ -0.88
VPS29-203ENST00000546588 TXLNAP40222 546 aa9.53□□□□□ -0.88
VPS29-203ENST00000546588 HMGCS2P54868 508 aa9.53□□□□□ -0.88
VPS29-203ENST00000546588 DAB2P98082 770 aa9.53□□□□□ -0.88
VPS29-203ENST00000546588 ENOX2Q16206 610 aaKnown RBP9.53□□□□□ -0.88
VPS29-203ENST00000546588 TKFCQ3LXA3 575 aa9.53□□□□□ -0.88
VPS29-203ENST00000546588 PLA2G4EQ3MJ16 856 aa9.53□□□□□ -0.88
VPS29-203ENST00000546588 ZSCAN23Q3MJ62 389 aa9.53□□□□□ -0.88
VPS29-203ENST00000546588 FOXD4L6Q3SYB3 417 aaPredicted RBP9.53□□□□□ -0.88
VPS29-203ENST00000546588 GNASQ5JWF2 1037 aa9.53□□□□□ -0.88
VPS29-203ENST00000546588 SHC4Q6S5L8 630 aa9.53□□□□□ -0.88
VPS29-203ENST00000546588 FOXD4L3Q6VB84 417 aaPredicted RBP9.53□□□□□ -0.88
VPS29-203ENST00000546588 MB21D1Q8N884 522 aa9.53□□□□□ -0.88
VPS29-203ENST00000546588 TBCKQ8TEA7 893 aa9.53□□□□□ -0.88
VPS29-203ENST00000546588 RHBDD1Q8TEB9 315 aa9.53□□□□□ -0.88
VPS29-203ENST00000546588 CLEC4DQ8WXI8 215 aa9.53□□□□□ -0.88
VPS29-203ENST00000546588 MTMR9Q96QG7 549 aa9.53□□□□□ -0.88
VPS29-203ENST00000546588 P2RX7Q99572 595 aaKnown RBP9.53□□□□□ -0.88
VPS29-203ENST00000546588 GOLPH3LQ9H4A5 285 aa9.53□□□□□ -0.88
VPS29-203ENST00000546588 VAT1LQ9HCJ6 419 aa9.53□□□□□ -0.88
VPS29-203ENST00000546588 FBXO28Q9NVF7 368 aa9.53□□□□□ -0.88
VPS29-203ENST00000546588 KCNG1Q9UIX4 513 aa9.53□□□□□ -0.88
VPS29-203ENST00000546588 FZD1Q9UP38 647 aa9.53□□□□□ -0.88
VPS29-203ENST00000546588 PASKQ96RG2 1323 aa9.53□□□□□ -0.88
VPS29-203ENST00000546588 A6NHS1 94 aa9.52□□□□□ -0.89
VPS29-203ENST00000546588 CTAGE5O15320 804 aa9.52□□□□□ -0.89
VPS29-203ENST00000546588 ZBTB48P10074 688 aaPredicted RBP9.52□□□□□ -0.89
VPS29-203ENST00000546588 LIG1P18858 919 aa9.52□□□□□ -0.89
VPS29-203ENST00000546588 LONP1P36776 959 aaKnown RBP9.52□□□□□ -0.89
VPS29-203ENST00000546588 ME1P48163 572 aa9.52□□□□□ -0.89
VPS29-203ENST00000546588 ORC1Q13415 861 aa9.52□□□□□ -0.89
VPS29-203ENST00000546588 COG2Q14746 738 aa9.52□□□□□ -0.89
VPS29-203ENST00000546588 Q4G0T1 1027 aa9.52□□□□□ -0.89
VPS29-203ENST00000546588 ALG1LQ6GMV1 187 aa9.52□□□□□ -0.89
VPS29-203ENST00000546588 IGSF22Q8N9C0 903 aa9.52□□□□□ -0.89
VPS29-203ENST00000546588 RASGRP4Q8TDF6 673 aa9.52□□□□□ -0.89
VPS29-203ENST00000546588 LENG9Q96B70 501 aa9.52□□□□□ -0.89
VPS29-203ENST00000546588 AK8Q96MA6 479 aa9.52□□□□□ -0.89
VPS29-203ENST00000546588 PYM1Q9BRP8 204 aaKnown RBP9.52□□□□□ -0.89
VPS29-203ENST00000546588 ANO3Q9BYT9 981 aa9.52□□□□□ -0.89
VPS29-203ENST00000546588 CLSTN2Q9H4D0 955 aa9.52□□□□□ -0.89
VPS29-203ENST00000546588 KCNMB3Q9NPA1 279 aa9.52□□□□□ -0.89
VPS29-203ENST00000546588 AGTPBP1Q9UPW5 1226 aa9.52□□□□□ -0.89
VPS29-203ENST00000546588 DYRK1BQ9Y463 629 aa9.52□□□□□ -0.89
VPS29-203ENST00000546588 GPR25O00155 361 aa9.51□□□□□ -0.89
VPS29-203ENST00000546588 NEMFO60524 1076 aa9.51□□□□□ -0.89
VPS29-203ENST00000546588 FLOT1O75955 427 aa9.51□□□□□ -0.89
VPS29-203ENST00000546588 BCRP11274 1271 aa9.51□□□□□ -0.89
VPS29-203ENST00000546588 PFKFB1P16118 471 aa9.51□□□□□ -0.89
VPS29-203ENST00000546588 ZYXQ15942 572 aaKnown RBP9.51□□□□□ -0.89
VPS29-203ENST00000546588 INF2Q27J81 1249 aa9.51□□□□□ -0.89
VPS29-203ENST00000546588 MAP1SQ66K74 1059 aaPredicted RBP9.51□□□□□ -0.89
VPS29-203ENST00000546588 CAVIN1Q6NZI2 390 aaKnown RBP9.51□□□□□ -0.89
VPS29-203ENST00000546588 DLK2Q6UY11 383 aa9.51□□□□□ -0.89
VPS29-203ENST00000546588 NIPA1Q7RTP0 329 aa9.51□□□□□ -0.89
VPS29-203ENST00000546588 MCF2L2Q86YR7 1114 aa9.51□□□□□ -0.89
VPS29-203ENST00000546588 ZNF295-AS1Q8N0V1 137 aa9.51□□□□□ -0.89
VPS29-203ENST00000546588 PIBF1Q8WXW3 757 aa9.51□□□□□ -0.89
VPS29-203ENST00000546588 ACDQ96AP0 544 aa9.51□□□□□ -0.89
VPS29-203ENST00000546588 CCSER1Q9C0I3 900 aa9.51□□□□□ -0.89
VPS29-203ENST00000546588 RRAGCQ9HB90 399 aa9.51□□□□□ -0.89
VPS29-203ENST00000546588 ZCCHC17Q9NP64 241 aaKnown RBP9.51□□□□□ -0.89
VPS29-203ENST00000546588 HOXC10Q9NYD6 342 aa9.51□□□□□ -0.89
VPS29-203ENST00000546588 DACT1Q9NYF0 836 aa9.51□□□□□ -0.89
VPS29-203ENST00000546588 TMOD4Q9NZQ9 345 aa9.51□□□□□ -0.89
VPS29-203ENST00000546588 CASP8AP2Q9UKL3 1982 aa9.51□□□□□ -0.89
VPS29-203ENST00000546588 DOCK5Q9H7D0 1870 aa9.51□□□□□ -0.89
VPS29-203ENST00000546588 IGLV3-22A0A075B6J6 115 aa9.5□□□□□ -0.89
VPS29-203ENST00000546588 GOLGA6L4A6NEF3 574 aa9.5□□□□□ -0.89
VPS29-203ENST00000546588 OR52Z1P0C646 297 aa9.5□□□□□ -0.89
VPS29-203ENST00000546588 NDUFA8P51970 172 aa9.5□□□□□ -0.89
VPS29-203ENST00000546588 CEBPZQ03701 1054 aaKnown RBP9.5□□□□□ -0.89
VPS29-203ENST00000546588 IKQ13123 557 aaPredicted RBP9.5□□□□□ -0.89
VPS29-203ENST00000546588 PDIA5Q14554 519 aa9.5□□□□□ -0.89
VPS29-203ENST00000546588 IL17AQ16552 155 aa9.5□□□□□ -0.89
VPS29-203ENST00000546588 NT5DC1Q5TFE4 455 aa9.5□□□□□ -0.89
VPS29-203ENST00000546588 LRSAM1Q6UWE0 723 aa9.5□□□□□ -0.89
VPS29-203ENST00000546588 FASTKD5Q7L8L6 764 aaKnown RBP9.5□□□□□ -0.89
VPS29-203ENST00000546588 NT5DC4Q86YG4 428 aa9.5□□□□□ -0.89
VPS29-203ENST00000546588 CCAR1Q8IX12 1150 aaKnown RBP9.5□□□□□ -0.89
VPS29-203ENST00000546588 SPATA20Q8TB22 786 aa9.5□□□□□ -0.89
VPS29-203ENST00000546588 ETNPPLQ8TBG4 499 aa9.5□□□□□ -0.89
VPS29-203ENST00000546588 OPTNQ96CV9 577 aa9.5□□□□□ -0.89
VPS29-203ENST00000546588 ATG4CQ96DT6 458 aa9.5□□□□□ -0.89
VPS29-203ENST00000546588 HHIPL1Q96JK4 782 aa9.5□□□□□ -0.89
VPS29-203ENST00000546588 CLMNQ96JQ2 1002 aa9.5□□□□□ -0.89
VPS29-203ENST00000546588 TEX13BQ9BXU2 312 aa9.5□□□□□ -0.89
VPS29-203ENST00000546588 TANGO6Q9C0B7 1094 aa9.5□□□□□ -0.89
VPS29-203ENST00000546588 NUP62CLQ9H1M0 184 aa9.5□□□□□ -0.89
VPS29-203ENST00000546588 TMEM60Q9H2L4 133 aa9.5□□□□□ -0.89
VPS29-203ENST00000546588 ELP3Q9H9T3 547 aa9.5□□□□□ -0.89
VPS29-203ENST00000546588 NMRK2Q9NPI5 230 aa9.5□□□□□ -0.89
VPS29-203ENST00000546588 TMEM260Q9NX78 707 aa9.5□□□□□ -0.89
VPS29-203ENST00000546588 USP25Q9UHP3 1055 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms