RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 MARK3P27448 753 aa16.98■□□□□ 0.31
CUX1-211ENST00000546411 MAPK4P31152 587 aa16.98■□□□□ 0.31
CUX1-211ENST00000546411 HSPA1LP34931 641 aa16.98■□□□□ 0.31
CUX1-211ENST00000546411 CEP55Q53EZ4 464 aa16.98■□□□□ 0.31
CUX1-211ENST00000546411 SLC27A3Q5K4L6 730 aa16.98■□□□□ 0.31
CUX1-211ENST00000546411 RNF207Q6ZRF8 634 aa16.98■□□□□ 0.31
CUX1-211ENST00000546411 SEMA6BQ9H3T3 888 aa16.98■□□□□ 0.31
CUX1-211ENST00000546411 CHORDC1Q9UHD1 332 aaPredicted RBP16.98■□□□□ 0.31
CUX1-211ENST00000546411 ZNF148Q9UQR1 794 aa16.98■□□□□ 0.31
CUX1-211ENST00000546411 APBA1Q02410 837 aa16.98■□□□□ 0.31
CUX1-211ENST00000546411 IFT88Q13099 833 aa16.98■□□□□ 0.31
CUX1-211ENST00000546411 PRAMEF18Q5VWM3 479 aa16.98■□□□□ 0.31
CUX1-211ENST00000546411 CIAPIN1Q6FI81 312 aa16.98■□□□□ 0.31
CUX1-211ENST00000546411 FBF1Q8TES7 1133 aa16.98■□□□□ 0.31
CUX1-211ENST00000546411 NOVA2Q9UNW9 492 aaKnown RBP16.98■□□□□ 0.31
CUX1-211ENST00000546411 CSADQ9Y600 493 aa16.98■□□□□ 0.31
CUX1-211ENST00000546411 FHOD1Q9Y613 1164 aa16.98■□□□□ 0.31
CUX1-211ENST00000546411 TACC3Q9Y6A5 838 aa16.98■□□□□ 0.31
CUX1-211ENST00000546411 ZBTB7AO95365 584 aa16.98■□□□□ 0.31
CUX1-211ENST00000546411 ECE1P42892 770 aa16.98■□□□□ 0.31
CUX1-211ENST00000546411 GJB7Q6PEY0 223 aa16.98■□□□□ 0.31
CUX1-211ENST00000546411 TMEM206Q9H813 350 aa16.98■□□□□ 0.31
CUX1-211ENST00000546411 INO80B-WBP1J3KQ70 363 aa16.97■□□□□ 0.31
CUX1-211ENST00000546411 SSTR3P32745 418 aaPredicted RBP16.97■□□□□ 0.31
CUX1-211ENST00000546411 EN1Q05925 392 aaPredicted RBP16.97■□□□□ 0.31
CUX1-211ENST00000546411 CYP4F22Q6NT55 531 aa16.97■□□□□ 0.31
CUX1-211ENST00000546411 PPP1R21Q6ZMI0 780 aa16.97■□□□□ 0.31
CUX1-211ENST00000546411 ARHGAP27Q6ZUM4 889 aa16.97■□□□□ 0.31
CUX1-211ENST00000546411 ZBTB33Q86T24 672 aa16.97■□□□□ 0.31
CUX1-211ENST00000546411 FAM160B2Q86V87 743 aa16.97■□□□□ 0.31
CUX1-211ENST00000546411 ELOA2Q8IYF1 753 aaPredicted RBP16.97■□□□□ 0.31
CUX1-211ENST00000546411 INO80BQ9C086 356 aaPredicted RBP16.97■□□□□ 0.31
CUX1-211ENST00000546411 AS3MTQ9HBK9 375 aa16.97■□□□□ 0.31
CUX1-211ENST00000546411 KCNQ5Q9NR82 932 aa16.97■□□□□ 0.31
CUX1-211ENST00000546411 JCADQ9P266 1359 aa16.97■□□□□ 0.31
CUX1-211ENST00000546411 DDTLA6NHG4 134 aaPredicted RBP16.97■□□□□ 0.31
CUX1-211ENST00000546411 CATSPER3Q86XQ3 398 aa16.97■□□□□ 0.31
CUX1-211ENST00000546411 ACER1Q8TDN7 264 aa16.97■□□□□ 0.31
CUX1-211ENST00000546411 NXF1Q9UBU9 619 aaKnown RBP16.97■□□□□ 0.31
CUX1-211ENST00000546411 GOLGA8SH3BPF8 625 aa16.97■□□□□ 0.31
CUX1-211ENST00000546411 DDX4Q9NQI0 724 aaKnown RBP16.97■□□□□ 0.31
CUX1-211ENST00000546411 CAPN6Q9Y6Q1 641 aa16.97■□□□□ 0.31
CUX1-211ENST00000546411 KLRC1P26715 233 aa16.97■□□□□ 0.31
CUX1-211ENST00000546411 LMBRD2Q68DH5 695 aaPredicted RBP16.97■□□□□ 0.31
CUX1-211ENST00000546411 PASD1Q8IV76 773 aa16.97■□□□□ 0.31
CUX1-211ENST00000546411 MSANTD4Q8NCY6 345 aa16.97■□□□□ 0.31
CUX1-211ENST00000546411 PPM1EQ8WY54 764 aa16.97■□□□□ 0.31
CUX1-211ENST00000546411 RNF14Q9UBS8 474 aa16.97■□□□□ 0.31
CUX1-211ENST00000546411 TBK1Q9UHD2 729 aa16.97■□□□□ 0.31
CUX1-211ENST00000546411 AMACRQ9UHK6 382 aa16.97■□□□□ 0.31
CUX1-211ENST00000546411 THAP12O43422 761 aa16.96■□□□□ 0.31
CUX1-211ENST00000546411 UCHL3P15374 230 aa16.96■□□□□ 0.31
CUX1-211ENST00000546411 TFAMQ00059 246 aaKnown RBP16.96■□□□□ 0.31
CUX1-211ENST00000546411 STRIP1Q5VSL9 837 aa16.96■□□□□ 0.31
CUX1-211ENST00000546411 SCYL2Q6P3W7 929 aa16.96■□□□□ 0.31
CUX1-211ENST00000546411 TMEM39BQ9GZU3 492 aa16.96■□□□□ 0.31
CUX1-211ENST00000546411 ZHX2Q9Y6X8 837 aa16.96■□□□□ 0.31
CUX1-211ENST00000546411 AKAP12Q02952 1782 aa16.96■□□□□ 0.31
CUX1-211ENST00000546411 SRGAP2CP0DJJ0 459 aa16.96■□□□□ 0.31
CUX1-211ENST00000546411 SH2D3CQ8N5H7 860 aa16.96■□□□□ 0.31
CUX1-211ENST00000546411 XXYLT1Q8NBI6 393 aa16.96■□□□□ 0.31
CUX1-211ENST00000546411 HIP1RO75146 1068 aa16.96■□□□□ 0.31
CUX1-211ENST00000546411 TMEM191BP0C7N4 346 aa16.96■□□□□ 0.31
CUX1-211ENST00000546411 PLA2G4AP47712 749 aa16.96■□□□□ 0.31
CUX1-211ENST00000546411 ORC2Q13416 577 aaPredicted RBP16.96■□□□□ 0.31
CUX1-211ENST00000546411 SGO2Q562F6 1265 aa16.96■□□□□ 0.31
CUX1-211ENST00000546411 EMBQ6PCB8 327 aa16.96■□□□□ 0.31
CUX1-211ENST00000546411 PBKQ96KB5 322 aa16.96■□□□□ 0.31
CUX1-211ENST00000546411 PRMT6Q96LA8 375 aaPredicted RBP16.96■□□□□ 0.31
CUX1-211ENST00000546411 IVNS1ABPQ9Y6Y0 642 aa16.96■□□□□ 0.31
CUX1-211ENST00000546411 MED24O75448 989 aa16.95■□□□□ 0.3
CUX1-211ENST00000546411 CYFIP1Q7L576 1253 aa16.95■□□□□ 0.3
CUX1-211ENST00000546411 GLIS3Q8NEA6 775 aa16.95■□□□□ 0.3
CUX1-211ENST00000546411 CYP2W1Q8TAV3 490 aa16.95■□□□□ 0.3
CUX1-211ENST00000546411 VTI1AQ96AJ9 217 aa16.95■□□□□ 0.3
CUX1-211ENST00000546411 FMO2Q99518 471 aa16.95■□□□□ 0.3
CUX1-211ENST00000546411 HEMGNQ9BXL5 484 aa16.95■□□□□ 0.3
CUX1-211ENST00000546411 RBM12Q9NTZ6 932 aaKnown RBP16.95■□□□□ 0.3
CUX1-211ENST00000546411 PLAAQ9Y263 795 aa16.95■□□□□ 0.3
CUX1-211ENST00000546411 EMSYQ7Z589 1322 aa16.95■□□□□ 0.3
CUX1-211ENST00000546411 NR1D1P20393 614 aa16.95■□□□□ 0.3
CUX1-211ENST00000546411 ZKSCAN8Q15776 578 aaPredicted RBP16.95■□□□□ 0.3
CUX1-211ENST00000546411 EAPPQ56P03 285 aaPredicted RBP16.95■□□□□ 0.3
CUX1-211ENST00000546411 BSPRYQ5W0U4 402 aa16.95■□□□□ 0.3
CUX1-211ENST00000546411 DENND3A2RUS2 1198 aa16.95■□□□□ 0.3
CUX1-211ENST00000546411 H2AFXP16104 143 aaPredicted RBP16.95■□□□□ 0.3
CUX1-211ENST00000546411 FXR2P51116 673 aaKnown RBP eCLIP16.95■□□□□ 0.3
CUX1-211ENST00000546411 DR1Q01658 176 aa16.95■□□□□ 0.3
CUX1-211ENST00000546411 NT5DC1Q5TFE4 455 aa16.95■□□□□ 0.3
CUX1-211ENST00000546411 SCARA5Q6ZMJ2 495 aa16.95■□□□□ 0.3
CUX1-211ENST00000546411 TAOK1Q7L7X3 1001 aa16.95■□□□□ 0.3
CUX1-211ENST00000546411 SLC51AQ86UW1 340 aa16.95■□□□□ 0.3
CUX1-211ENST00000546411 ZFPM1Q8IX07 1006 aa16.95■□□□□ 0.3
CUX1-211ENST00000546411 KIAA0895Q8NCT3 520 aa16.95■□□□□ 0.3
CUX1-211ENST00000546411 FAM213AQ9BRX8 229 aa16.95■□□□□ 0.3
CUX1-211ENST00000546411 TRIM6Q9C030 488 aaPredicted RBP16.95■□□□□ 0.3
CUX1-211ENST00000546411 FTLP02792 175 aaPredicted RBP16.94■□□□□ 0.3
CUX1-211ENST00000546411 CYP11B2P19099 503 aa16.94■□□□□ 0.3
CUX1-211ENST00000546411 DYNLT1P63172 113 aa16.94■□□□□ 0.3
CUX1-211ENST00000546411 MXRA7P84157 204 aa16.94■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms