RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 HMGN5P82970 282 aaKnown RBP16.01■□□□□ 0.15
USP28-209ENST00000540925 PRKCEQ02156 737 aa16.01■□□□□ 0.15
USP28-209ENST00000540925 TARBP2Q15633 366 aaKnown RBP16.01■□□□□ 0.15
USP28-209ENST00000540925 TMCO2Q7Z6W1 182 aaPredicted RBP16.01■□□□□ 0.15
USP28-209ENST00000540925 POTEDQ86YR6 584 aa16.01■□□□□ 0.15
USP28-209ENST00000540925 NME8Q8N427 588 aa16.01■□□□□ 0.15
USP28-209ENST00000540925 MYLIPQ8WY64 445 aa16.01■□□□□ 0.15
USP28-209ENST00000540925 IFIH1Q9BYX4 1025 aaKnown RBP16.01■□□□□ 0.15
USP28-209ENST00000540925 FAM49AQ9H0Q0 323 aaPredicted RBP16.01■□□□□ 0.15
USP28-209ENST00000540925 BRMS1Q9HCU9 246 aa16.01■□□□□ 0.15
USP28-209ENST00000540925 TCEAL9Q9UHQ7 104 aa16.01■□□□□ 0.15
USP28-209ENST00000540925 COL4A6Q14031 1691 aa16.01■□□□□ 0.15
USP28-209ENST00000540925 CA3P07451 260 aa16■□□□□ 0.15
USP28-209ENST00000540925 GHRP10912 638 aa16■□□□□ 0.15
USP28-209ENST00000540925 HTRA4P83105 476 aaPredicted RBP16■□□□□ 0.15
USP28-209ENST00000540925 IER5Q5VY09 327 aa16■□□□□ 0.15
USP28-209ENST00000540925 TSHZ1Q6ZSZ6 1077 aa16■□□□□ 0.15
USP28-209ENST00000540925 MIER3Q7Z3K6 550 aa16■□□□□ 0.15
USP28-209ENST00000540925 FBXO18Q8NFZ0 1043 aa16■□□□□ 0.15
USP28-209ENST00000540925 AGO3Q9H9G7 860 aaKnown RBP16■□□□□ 0.15
USP28-209ENST00000540925 SLC28A3Q9HAS3 691 aa16■□□□□ 0.15
USP28-209ENST00000540925 SAMM50Q9Y512 469 aa16■□□□□ 0.15
USP28-209ENST00000540925 TRPV2Q9Y5S1 764 aa16■□□□□ 0.15
USP28-209ENST00000540925 XIRP2A4UGR9 3374 aa15.99■□□□□ 0.15
USP28-209ENST00000540925 LCHNA4D1U4 455 aa15.99■□□□□ 0.15
USP28-209ENST00000540925 TAP1Q03518 808 aa15.99■□□□□ 0.15
USP28-209ENST00000540925 TRIM29Q14134 588 aa15.99■□□□□ 0.15
USP28-209ENST00000540925 PPP2R2DQ66LE6 453 aa15.99■□□□□ 0.15
USP28-209ENST00000540925 CKAP2LQ8IYA6 745 aa15.99■□□□□ 0.15
USP28-209ENST00000540925 USP38Q8NB14 1042 aa15.99■□□□□ 0.15
USP28-209ENST00000540925 TOP1MTQ969P6 601 aa15.99■□□□□ 0.15
USP28-209ENST00000540925 NIFKQ9BYG3 293 aaKnown RBP15.99■□□□□ 0.15
USP28-209ENST00000540925 CELF4Q9BZC1 486 aaKnown RBP15.99■□□□□ 0.15
USP28-209ENST00000540925 CEP131Q9UPN4 1083 aa15.99■□□□□ 0.15
USP28-209ENST00000540925 TLL1O43897 1013 aa15.98■□□□□ 0.15
USP28-209ENST00000540925 ST18O60284 1047 aa15.98■□□□□ 0.15
USP28-209ENST00000540925 FOSBP53539 338 aa15.98■□□□□ 0.15
USP28-209ENST00000540925 TMEM62Q0P6H9 643 aa15.98■□□□□ 0.15
USP28-209ENST00000540925 ADGRE1Q14246 886 aa15.98■□□□□ 0.15
USP28-209ENST00000540925 CRIPAKQ8N1N5 446 aa15.98■□□□□ 0.15
USP28-209ENST00000540925 SP7Q8TDD2 431 aaPredicted RBP15.98■□□□□ 0.15
USP28-209ENST00000540925 LINC01599Q8WXQ3 324 aa15.98■□□□□ 0.15
USP28-209ENST00000540925 EVPLQ92817 2033 aa15.98■□□□□ 0.15
USP28-209ENST00000540925 C8orf76Q96K31 380 aa15.98■□□□□ 0.15
USP28-209ENST00000540925 MTMR9Q96QG7 549 aa15.98■□□□□ 0.15
USP28-209ENST00000540925 RAD9AQ99638 391 aa15.98■□□□□ 0.15
USP28-209ENST00000540925 FOXP1Q9H334 677 aaPredicted RBP15.98■□□□□ 0.15
USP28-209ENST00000540925 PRDM12Q9H4Q4 367 aa15.98■□□□□ 0.15
USP28-209ENST00000540925 UPF2Q9HAU5 1272 aaKnown RBP15.98■□□□□ 0.15
USP28-209ENST00000540925 CDHR5Q9HBB8 845 aa15.98■□□□□ 0.15
USP28-209ENST00000540925 NRBP2Q9NSY0 501 aa15.98■□□□□ 0.15
USP28-209ENST00000540925 LOXHD1Q8IVV2 1947 aa15.98■□□□□ 0.15
USP28-209ENST00000540925 IGKV6-21A0A0C4DH24 114 aa15.97■□□□□ 0.15
USP28-209ENST00000540925 KIF28PB7ZC32 967 aa15.97■□□□□ 0.15
USP28-209ENST00000540925 MAGEB2O15479 319 aa15.97■□□□□ 0.15
USP28-209ENST00000540925 GPR32O75388 356 aa15.97■□□□□ 0.15
USP28-209ENST00000540925 AMHP03971 560 aa15.97■□□□□ 0.15
USP28-209ENST00000540925 GUCY1B3Q02153 619 aa15.97■□□□□ 0.15
USP28-209ENST00000540925 XKR3Q5GH77 459 aa15.97■□□□□ 0.15
USP28-209ENST00000540925 SPRED2Q7Z698 418 aa15.97■□□□□ 0.15
USP28-209ENST00000540925 SLFN12Q8IYM2 578 aa15.97■□□□□ 0.15
USP28-209ENST00000540925 TMEM40Q8WWA1 233 aa15.97■□□□□ 0.15
USP28-209ENST00000540925 TMX3Q96JJ7 454 aa15.97■□□□□ 0.15
USP28-209ENST00000540925 BACH2Q9BYV9 841 aa15.97■□□□□ 0.15
USP28-209ENST00000540925 RC3H2Q9HBD1 1191 aaKnown RBP15.97■□□□□ 0.15
USP28-209ENST00000540925 WRAP73Q9P2S5 460 aaPredicted RBP15.97■□□□□ 0.15
USP28-209ENST00000540925 PADI3Q9ULW8 664 aa15.97■□□□□ 0.15
USP28-209ENST00000540925 TTC28Q96AY4 2481 aa15.97■□□□□ 0.15
USP28-209ENST00000540925 TTC3P53804 2025 aa15.96■□□□□ 0.15
USP28-209ENST00000540925 TMEM150BA6NC51 233 aa15.96■□□□□ 0.15
USP28-209ENST00000540925 EPOPA6NHQ4 379 aa15.96■□□□□ 0.15
USP28-209ENST00000540925 ENPP3O14638 875 aa15.96■□□□□ 0.15
USP28-209ENST00000540925 FOSL2P15408 326 aa15.96■□□□□ 0.15
USP28-209ENST00000540925 CD52P31358 61 aa15.96■□□□□ 0.15
USP28-209ENST00000540925 CLCN3P51790 818 aa15.96■□□□□ 0.15
USP28-209ENST00000540925 PSMC5P62195 406 aa15.96■□□□□ 0.15
USP28-209ENST00000540925 EPHA7Q15375 998 aa15.96■□□□□ 0.15
USP28-209ENST00000540925 FAM43BQ6ZT52 329 aaPredicted RBP15.96■□□□□ 0.15
USP28-209ENST00000540925 ANO5Q75V66 913 aa15.96■□□□□ 0.15
USP28-209ENST00000540925 RTN4RL1Q86UN2 441 aaPredicted RBP15.96■□□□□ 0.15
USP28-209ENST00000540925 MYOCDQ8IZQ8 938 aa15.96■□□□□ 0.15
USP28-209ENST00000540925 BANK1Q8NDB2 785 aa15.96■□□□□ 0.15
USP28-209ENST00000540925 TMX1Q9H3N1 280 aa15.96■□□□□ 0.15
USP28-209ENST00000540925 MYO9BQ13459 2157 aa15.95■□□□□ 0.14
USP28-209ENST00000540925 LINC01553A4QN01 128 aa15.95■□□□□ 0.14
USP28-209ENST00000540925 M0QZ92 97 aa15.95■□□□□ 0.14
USP28-209ENST00000540925 NEMFO60524 1076 aa15.95■□□□□ 0.14
USP28-209ENST00000540925 P4HBP07237 508 aaKnown RBP15.95■□□□□ 0.14
USP28-209ENST00000540925 POU3F3P20264 500 aaPredicted RBP15.95■□□□□ 0.14
USP28-209ENST00000540925 U2AF2P26368 475 aaKnown RBP eCLIP15.95■□□□□ 0.14
USP28-209ENST00000540925 QARSP47897 775 aaKnown RBP15.95■□□□□ 0.14
USP28-209ENST00000540925 SAFBQ15424 915 aaKnown RBP eCLIP15.95■□□□□ 0.14
USP28-209ENST00000540925 EFCAB12Q6NXP0 572 aa15.95■□□□□ 0.14
USP28-209ENST00000540925 TRMT1LQ7Z2T5 733 aaKnown RBP15.95■□□□□ 0.14
USP28-209ENST00000540925 MAFAQ8NHW3 353 aaPredicted RBP15.95■□□□□ 0.14
USP28-209ENST00000540925 TSPYL2Q9H2G4 693 aaPredicted RBP15.95■□□□□ 0.14
USP28-209ENST00000540925 TMEM60Q9H2L4 133 aa15.95■□□□□ 0.14
USP28-209ENST00000540925 ADAMTS10Q9H324 1103 aa15.95■□□□□ 0.14
USP28-209ENST00000540925 ERVK-5Q9HDB9 667 aa15.95■□□□□ 0.14
USP28-209ENST00000540925 INSL6Q9Y581 213 aa15.95■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms