RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 TUBA1AQ71U36 451 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 FUKQ8N0W3 1084 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 CYGBQ8WWM9 190 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 SYMPKQ92797 1274 aaKnown RBP9.36□□□□□ -0.91
YBX3-208ENST00000540447 LENG1Q96BZ8 264 aaPredicted RBP9.36□□□□□ -0.91
YBX3-208ENST00000540447 MLXIPQ9HAP2 919 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 NPHS2Q9NP85 383 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 GINM1Q9NU53 330 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 ARPP21Q9UBL0 812 aaPredicted RBP9.36□□□□□ -0.91
YBX3-208ENST00000540447 FAM153AQ9UHL3 310 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 MID2Q9UJV3 735 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 KLHL20Q9Y2M5 609 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 BAIAP3O94812 1187 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 OATP04181 439 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 IL15P40933 162 aaPredicted RBP9.36□□□□□ -0.91
YBX3-208ENST00000540447 PTH1RQ03431 593 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 EXOC3L4Q17RC7 722 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 LINC00301Q8NCQ3 95 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 POMGNT1Q8WZA1 660 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 PBXIP1Q96AQ6 731 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 CBFA2T3O75081 653 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 KRT38O76015 456 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 COPB2P35606 906 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 KCNA1Q09470 495 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 TTC33Q6PID6 262 aaPredicted RBP9.36□□□□□ -0.91
YBX3-208ENST00000540447 IZUMO2Q6UXV1 221 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 PODNQ7Z5L7 613 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 DHTKD1Q96HY7 919 aaPredicted RBP9.36□□□□□ -0.91
YBX3-208ENST00000540447 DEPDC7Q96QD5 511 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 SAP30BPQ9UHR5 308 aaKnown RBP9.36□□□□□ -0.91
YBX3-208ENST00000540447 RTEL1-TNFRSF6BF6WH68 1400 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 NPC1L1Q9UHC9 1359 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 B2RBV5 119 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 PPIP5K2O43314 1243 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 RGS2P41220 211 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 KYNUQ16719 465 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 POTEAQ6S8J7 498 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 MCUQ8NE86 351 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 NDNQ99608 321 aa9.36□□□□□ -0.91
YBX3-208ENST00000540447 NCK2O43639 380 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 ALDH18A1P54886 795 aaKnown RBP9.35□□□□□ -0.91
YBX3-208ENST00000540447 TUBA4AP68366 448 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 MAN2A1Q16706 1144 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 RSRC2Q7L4I2 434 aaKnown RBP9.35□□□□□ -0.91
YBX3-208ENST00000540447 NSL1Q96IY1 281 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 KCNK16Q96T55 309 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 GINS4Q9BRT9 223 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 MYL10Q9BUA6 226 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 IRX2Q9BZI1 471 aaPredicted RBP9.35□□□□□ -0.91
YBX3-208ENST00000540447 MRPL44Q9H9J2 332 aaKnown RBP9.35□□□□□ -0.91
YBX3-208ENST00000540447 COMMD3-BMI1R4GMX3 469 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 PIK3C2GO75747 1445 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 CFAP99D6REC4 459 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 ATP5J2-PTCD1G3V325 749 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 GOLGA8RI6L899 631 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 SEMA3EO15041 775 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 PTCD1O75127 700 aaKnown RBP9.35□□□□□ -0.91
YBX3-208ENST00000540447 KRT37O76014 449 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 TUBA3CQ13748 450 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 ZC3H12BQ5HYM0 836 aaKnown RBP9.35□□□□□ -0.91
YBX3-208ENST00000540447 ZNF658Q5TYW1 1059 aaPredicted RBP9.35□□□□□ -0.91
YBX3-208ENST00000540447 NCAPG2Q86XI2 1143 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 ARL8AQ96BM9 186 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 RPS6KC1Q96S38 1066 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 PNKPQ96T60 521 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 RANBP17Q9H2T7 1088 aaKnown RBP9.35□□□□□ -0.91
YBX3-208ENST00000540447 TMCO1Q9UM00 188 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 CCDC195A0A1B0GUA6 201 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 E7EWF7 191 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 CLK1P49759 484 aaKnown RBP9.35□□□□□ -0.91
YBX3-208ENST00000540447 CAV1Q03135 178 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 DEPDC1Q5TB30 811 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 AFAP1Q8N556 730 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 DDX47Q9H0S4 455 aaKnown RBP9.35□□□□□ -0.91
YBX3-208ENST00000540447 THAP9Q9H5L6 903 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 L1RE1Q9UN81 338 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 GYS1P13807 737 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 C4BPBP20851 252 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 MAP3K10Q02779 954 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 TFCP2Q12800 502 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 MORF4L2Q15014 288 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 BBS9Q3SYG4 887 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 CLEC4GQ6UXB4 293 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 TRIM67Q6ZTA4 783 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 PCGF5Q86SE9 256 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 LRRC34Q8IZ02 419 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 KLHL31Q9H511 634 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 CD209Q9NNX6 404 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 SLC39A2Q9NP94 309 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 SH3BP1Q9Y3L3 701 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 BAG3O95817 575 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 GSNP06396 782 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 PRPSAP1Q14558 356 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 LLGL1Q15334 1064 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 OASLQ15646 514 aaKnown RBP9.35□□□□□ -0.91
YBX3-208ENST00000540447 LRRC8EQ6NSJ5 796 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 NEK8Q86SG6 692 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 OR2W6PQ8NHA6 318 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 TTC25Q96NG3 672 aa9.35□□□□□ -0.91
YBX3-208ENST00000540447 ZCWPW1Q9H0M4 648 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 125.1 ms