RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 AZIN2Q96A70 460 aa10.3□□□□□ -0.76
CTNNA1-243ENST00000540387 FAM136AQ96C01 138 aa10.3□□□□□ -0.76
CTNNA1-243ENST00000540387 IFT74Q96LB3 600 aa10.3□□□□□ -0.76
CTNNA1-243ENST00000540387 VCX3BQ9H321 246 aa10.3□□□□□ -0.76
CTNNA1-243ENST00000540387 RNPEPL1Q9HAU8 725 aa10.3□□□□□ -0.76
CTNNA1-243ENST00000540387 VCX3AQ9NNX9 186 aa10.3□□□□□ -0.76
CTNNA1-243ENST00000540387 HELLSQ9NRZ9 838 aa10.3□□□□□ -0.76
CTNNA1-243ENST00000540387 SCOCQ9UIL1 159 aa10.3□□□□□ -0.76
CTNNA1-243ENST00000540387 CAPN11Q9UMQ6 739 aa10.3□□□□□ -0.76
CTNNA1-243ENST00000540387 KLF18A0A0U1RQI7 1052 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 TCRBV5S4A2TA0A5A2 114 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 MMEP08473 750 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 BNIP1Q12981 228 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 CACNA1SQ13698 1873 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 UBE3CQ15386 1083 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 TCP11X2Q5H9J9 407 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 GBP7Q8N8V2 638 aaPredicted RBP10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 WDR66Q8TBY9 1149 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 ZNF384Q8TF68 577 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 ALG1Q9BT22 464 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 TRIM33Q9UPN9 1127 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 WDR37Q9Y2I8 494 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 MAST3O60307 1309 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 MYO5AQ9Y4I1 1855 aaKnown RBP10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 KCNJ18B7U540 433 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 E2F6O75461 281 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 TMCC1O94876 653 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 VIL1P09327 827 aaKnown RBP10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 AFMP43652 599 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 SPAG1Q07617 926 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 CBX3Q13185 183 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 KCNJ12Q14500 433 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 HLTFQ14527 1009 aaKnown RBP eCLIP10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 TSNAXIP1Q2TAA8 658 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 CFAP221Q4G0U5 840 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 ASRGL1Q7L266 308 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 DNAJC9Q8WXX5 260 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 PTPRN2Q92932 1015 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 PBKQ96KB5 322 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 KRT12Q99456 494 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 SH2D4AQ9H788 454 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 ZNF277Q9NRM2 450 aaPredicted RBP10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 ATP8A2Q9NTI2 1148 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 TUBGCP4Q9UGJ1 667 aa10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 FBXO2Q9UK22 296 aaPredicted RBP10.29□□□□□ -0.76
CTNNA1-243ENST00000540387 LTBP1Q14766 1721 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 PDS5AQ29RF7 1337 aaKnown RBP10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 KIF13BQ9NQT8 1826 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 ZNF263O14978 683 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 PRC1O43663 620 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 CHN1P15882 459 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 SERPINB4P48594 390 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 MCL1Q07820 350 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 PODNQ7Z5L7 613 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 ADGRA1Q86SQ6 560 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 SMYD1Q8NB12 490 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 LRRC45Q96CN5 670 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 KRT23Q9C075 422 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 LNPEPQ9UIQ6 1025 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 MYH2Q9UKX2 1941 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 SART1O43290 800 aaKnown RBP10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 PEX11AO75192 247 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 TPBGLP0DKB5 382 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 FUT4P22083 530 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 CYP7A1P22680 504 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 PTPREP23469 700 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 MECOMQ03112 1051 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 SAFBQ15424 915 aaKnown RBP eCLIP10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 KRT71Q3SY84 523 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 MFSD14BQ5SR56 506 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 CEP128Q6ZU80 1094 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 USP49Q70CQ1 688 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 KRT26Q7Z3Y9 468 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 CCNJLQ8IV13 435 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 FBXL16Q8N461 479 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 RNF10Q8N5U6 811 aaKnown RBP10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 SUPT20HQ8NEM7 779 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 STK32AQ8WU08 396 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 UBLCP1Q8WVY7 318 aaPredicted RBP10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 ATXN2LQ8WWM7 1075 aaKnown RBP10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 NSUN4Q96CB9 384 aaKnown RBP10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 AGAP3Q96P47 875 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 SYT17Q9BSW7 474 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 MXD3Q9BW11 206 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 TLR10Q9BXR5 811 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 PPP1R12CQ9BZL4 782 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 CARD9Q9H257 536 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 UNC45AQ9H3U1 944 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 CTNNAL1Q9UBT7 734 aa10.28□□□□□ -0.76
CTNNA1-243ENST00000540387 GPAA1O43292 621 aa10.27□□□□□ -0.77
CTNNA1-243ENST00000540387 ECE2O60344 883 aa10.27□□□□□ -0.77
CTNNA1-243ENST00000540387 GFPT2O94808 682 aa10.27□□□□□ -0.77
CTNNA1-243ENST00000540387 CCDC166P0CW27 439 aa10.27□□□□□ -0.77
CTNNA1-243ENST00000540387 ECHS1P30084 290 aa10.27□□□□□ -0.77
CTNNA1-243ENST00000540387 BTG3Q14201 252 aaPredicted RBP10.27□□□□□ -0.77
CTNNA1-243ENST00000540387 EXOC3L1Q86VI1 746 aa10.27□□□□□ -0.77
CTNNA1-243ENST00000540387 MB21D1Q8N884 522 aa10.27□□□□□ -0.77
CTNNA1-243ENST00000540387 MIGA1Q8NAN2 632 aa10.27□□□□□ -0.77
CTNNA1-243ENST00000540387 SMC1BQ8NDV3 1235 aa10.27□□□□□ -0.77
CTNNA1-243ENST00000540387 NCSTNQ92542 709 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms