RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 SEMA4AQ9H3S1 761 aa5.47□□□□□ -1.53
VPS13A-213ENST00000539950 KCNH7Q9NS40 1196 aa5.47□□□□□ -1.53
VPS13A-213ENST00000539950 FBXO10Q9UK96 956 aa5.47□□□□□ -1.53
VPS13A-213ENST00000539950 B3GALT1Q9Y5Z6 326 aa5.47□□□□□ -1.53
VPS13A-213ENST00000539950 TCRBV16S1A1N1A0A5B0 115 aa5.46□□□□□ -1.54
VPS13A-213ENST00000539950 PRAMEF22A3QJZ6 481 aa5.46□□□□□ -1.54
VPS13A-213ENST00000539950 ARHGAP6O43182 974 aa5.46□□□□□ -1.54
VPS13A-213ENST00000539950 CDC14BO60729 498 aa5.46□□□□□ -1.54
VPS13A-213ENST00000539950 RAD17O75943 681 aa5.46□□□□□ -1.54
VPS13A-213ENST00000539950 COMTP21964 271 aa5.46□□□□□ -1.54
VPS13A-213ENST00000539950 DUSP8Q13202 625 aa5.46□□□□□ -1.54
VPS13A-213ENST00000539950 PRKD1Q15139 912 aaPredicted RBP5.46□□□□□ -1.54
VPS13A-213ENST00000539950 HS1BP3Q53T59 392 aa5.46□□□□□ -1.54
VPS13A-213ENST00000539950 AGBL4Q5VU57 503 aa5.46□□□□□ -1.54
VPS13A-213ENST00000539950 TRIM68Q6AZZ1 485 aa5.46□□□□□ -1.54
VPS13A-213ENST00000539950 Q6ZSN1 163 aa5.46□□□□□ -1.54
VPS13A-213ENST00000539950 FILIP1Q7Z7B0 1213 aa5.46□□□□□ -1.54
VPS13A-213ENST00000539950 LILRB2Q8N423 598 aa5.46□□□□□ -1.54
VPS13A-213ENST00000539950 ZSWIM2Q8NEG5 633 aa5.46□□□□□ -1.54
VPS13A-213ENST00000539950 THAP3Q8WTV1 239 aaPredicted RBP5.46□□□□□ -1.54
VPS13A-213ENST00000539950 CFHR4Q92496 578 aa5.46□□□□□ -1.54
VPS13A-213ENST00000539950 MKL1Q969V6 931 aa5.46□□□□□ -1.54
VPS13A-213ENST00000539950 GBP4Q96PP9 640 aa5.46□□□□□ -1.54
VPS13A-213ENST00000539950 OR14A2Q96R54 314 aa5.46□□□□□ -1.54
VPS13A-213ENST00000539950 MRPL4Q9BYD3 311 aaKnown RBP5.46□□□□□ -1.54
VPS13A-213ENST00000539950 SRRDQ9UH36 339 aa5.46□□□□□ -1.54
VPS13A-213ENST00000539950 PTCH2Q9Y6C5 1203 aa5.46□□□□□ -1.54
VPS13A-213ENST00000539950 FOXP2O15409 715 aa5.45□□□□□ -1.54
VPS13A-213ENST00000539950 KCNQ2O43526 872 aa5.45□□□□□ -1.54
VPS13A-213ENST00000539950 SLPIP03973 132 aa5.45□□□□□ -1.54
VPS13A-213ENST00000539950 ACVRL1P37023 503 aa5.45□□□□□ -1.54
VPS13A-213ENST00000539950 MOGSQ13724 837 aa5.45□□□□□ -1.54
VPS13A-213ENST00000539950 NFYCQ13952 458 aa5.45□□□□□ -1.54
VPS13A-213ENST00000539950 TMEM132BQ14DG7 1078 aa5.45□□□□□ -1.54
VPS13A-213ENST00000539950 PCOLCEQ15113 449 aa5.45□□□□□ -1.54
VPS13A-213ENST00000539950 TMEM177Q53S58 311 aa5.45□□□□□ -1.54
VPS13A-213ENST00000539950 C2orf27AQ580R0 203 aa5.45□□□□□ -1.54
VPS13A-213ENST00000539950 CATSPEREQ5SY80 951 aa5.45□□□□□ -1.54
VPS13A-213ENST00000539950 TMEM200BQ69YZ2 307 aa5.45□□□□□ -1.54
VPS13A-213ENST00000539950 USP30Q70CQ3 517 aa5.45□□□□□ -1.54
VPS13A-213ENST00000539950 IGSF22Q8N9C0 903 aa5.45□□□□□ -1.54
VPS13A-213ENST00000539950 HIPK4Q8NE63 616 aa5.45□□□□□ -1.54
VPS13A-213ENST00000539950 PLA2G12BQ9BX93 195 aa5.45□□□□□ -1.54
VPS13A-213ENST00000539950 C12orf65Q9H3J6 166 aaKnown RBP5.45□□□□□ -1.54
VPS13A-213ENST00000539950 NCOA5Q9HCD5 579 aaKnown RBP5.45□□□□□ -1.54
VPS13A-213ENST00000539950 TRIM39Q9HCM9 518 aa5.45□□□□□ -1.54
VPS13A-213ENST00000539950 SLC30A1Q9Y6M5 507 aa5.45□□□□□ -1.54
VPS13A-213ENST00000539950 CCDC163A0A0D9SF12 145 aa5.44□□□□□ -1.54
VPS13A-213ENST00000539950 A0A0G2JNJ9 132 aa5.44□□□□□ -1.54
VPS13A-213ENST00000539950 SLC12A8A0AV02 714 aa5.44□□□□□ -1.54
VPS13A-213ENST00000539950 GOLGA6L22H0YM25 854 aa5.44□□□□□ -1.54
VPS13A-213ENST00000539950 ZBTB48P10074 688 aaPredicted RBP5.44□□□□□ -1.54
VPS13A-213ENST00000539950 SDHAP31040 664 aa5.44□□□□□ -1.54
VPS13A-213ENST00000539950 GDF5P43026 501 aa5.44□□□□□ -1.54
VPS13A-213ENST00000539950 MRE11P49959 708 aa5.44□□□□□ -1.54
VPS13A-213ENST00000539950 ZFPM1Q8IX07 1006 aa5.44□□□□□ -1.54
VPS13A-213ENST00000539950 WDR48Q8TAF3 677 aa5.44□□□□□ -1.54
VPS13A-213ENST00000539950 EDAQ92838 391 aa5.44□□□□□ -1.54
VPS13A-213ENST00000539950 SORCS2Q96PQ0 1159 aa5.44□□□□□ -1.54
VPS13A-213ENST00000539950 Q9UFV3 132 aa5.44□□□□□ -1.54
VPS13A-213ENST00000539950 ASB1Q9Y576 335 aa5.44□□□□□ -1.54
VPS13A-213ENST00000539950 FZD7O75084 574 aa5.43□□□□□ -1.54
VPS13A-213ENST00000539950 APPP05067 770 aa5.43□□□□□ -1.54
VPS13A-213ENST00000539950 ACO1P21399 889 aaKnown RBP5.43□□□□□ -1.54
VPS13A-213ENST00000539950 STAT5BP51692 787 aa5.43□□□□□ -1.54
VPS13A-213ENST00000539950 SOGA3Q5TF21 947 aa5.43□□□□□ -1.54
VPS13A-213ENST00000539950 GRAMD4Q6IC98 578 aa5.43□□□□□ -1.54
VPS13A-213ENST00000539950 C2orf69Q8N8R5 385 aa5.43□□□□□ -1.54
VPS13A-213ENST00000539950 ERCC4Q92889 916 aaPredicted RBP5.43□□□□□ -1.54
VPS13A-213ENST00000539950 PUF60Q9UHX1 559 aaKnown RBP5.43□□□□□ -1.54
VPS13A-213ENST00000539950 PLSCR1O15162 318 aa5.42□□□□□ -1.54
VPS13A-213ENST00000539950 HIP1RO75146 1068 aa5.42□□□□□ -1.54
VPS13A-213ENST00000539950 RAPGEF3O95398 923 aa5.42□□□□□ -1.54
VPS13A-213ENST00000539950 MEOX1P50221 254 aa5.42□□□□□ -1.54
VPS13A-213ENST00000539950 MECP2P51608 486 aaKnown RBP5.42□□□□□ -1.54
VPS13A-213ENST00000539950 IRF9Q00978 393 aa5.42□□□□□ -1.54
VPS13A-213ENST00000539950 USP39Q53GS9 565 aaKnown RBP5.42□□□□□ -1.54
VPS13A-213ENST00000539950 RNF207Q6ZRF8 634 aa5.42□□□□□ -1.54
VPS13A-213ENST00000539950 OTOP1Q7RTM1 612 aa5.42□□□□□ -1.54
VPS13A-213ENST00000539950 POLNQ7Z5Q5 900 aa5.42□□□□□ -1.54
VPS13A-213ENST00000539950 RTN4RL1Q86UN2 441 aaPredicted RBP5.42□□□□□ -1.54
VPS13A-213ENST00000539950 GPR135Q8IZ08 494 aa5.42□□□□□ -1.54
VPS13A-213ENST00000539950 RTKN2Q8IZC4 609 aa5.42□□□□□ -1.54
VPS13A-213ENST00000539950 BCL6BQ8N143 479 aaPredicted RBP5.42□□□□□ -1.54
VPS13A-213ENST00000539950 OR14K1Q8NGZ2 314 aa5.42□□□□□ -1.54
VPS13A-213ENST00000539950 EXTL1Q92935 676 aa5.42□□□□□ -1.54
VPS13A-213ENST00000539950 FOXRED1Q96CU9 486 aaPredicted RBP5.42□□□□□ -1.54
VPS13A-213ENST00000539950 CLUHP3Q96NS8 147 aa5.42□□□□□ -1.54
VPS13A-213ENST00000539950 DNAJC2Q99543 621 aaKnown RBP5.42□□□□□ -1.54
VPS13A-213ENST00000539950 OR10A2Q9H208 303 aa5.42□□□□□ -1.54
VPS13A-213ENST00000539950 HS3ST3A1Q9Y663 406 aa5.42□□□□□ -1.54
VPS13A-213ENST00000539950 KRT37O76014 449 aa5.41□□□□□ -1.54
VPS13A-213ENST00000539950 NPTXRO95502 500 aa5.41□□□□□ -1.54
VPS13A-213ENST00000539950 HGFACQ04756 655 aa5.41□□□□□ -1.54
VPS13A-213ENST00000539950 FOXL1Q12952 345 aa5.41□□□□□ -1.54
VPS13A-213ENST00000539950 FOXE3Q13461 319 aa5.41□□□□□ -1.54
VPS13A-213ENST00000539950 SF3A1Q15459 793 aaKnown RBP5.41□□□□□ -1.54
VPS13A-213ENST00000539950 NRN1LQ496H8 165 aa5.41□□□□□ -1.54
VPS13A-213ENST00000539950 MAMDC4Q6UXC1 1216 aa5.41□□□□□ -1.54
VPS13A-213ENST00000539950 BOCQ9BWV1 1114 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms