RNA–Protein interactions for RNA: ENST00000538909.1

CBX3P4-201, Transcript of chromobox 3 pseudogene 4, humanhuman

BASIC

Gene CBX3P4, Length 354 nt, Biotype transcribed processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-201ENST00000538909 CLK3P49761 638 aaKnown RBP3.17□□□□□ -1.9
CBX3P4-201ENST00000538909 STAT5BP51692 787 aa3.17□□□□□ -1.9
CBX3P4-201ENST00000538909 RACK1P63244 317 aaKnown RBP3.17□□□□□ -1.9
CBX3P4-201ENST00000538909 SAFB2Q14151 953 aaKnown RBP eCLIP3.17□□□□□ -1.9
CBX3P4-201ENST00000538909 ACAP1Q15027 740 aa3.17□□□□□ -1.9
CBX3P4-201ENST00000538909 EIF4HQ15056 248 aaKnown RBP3.17□□□□□ -1.9
CBX3P4-201ENST00000538909 SLC35F1Q5T1Q4 408 aa3.17□□□□□ -1.9
CBX3P4-201ENST00000538909 BTBD8Q5XKL5 378 aa3.17□□□□□ -1.9
CBX3P4-201ENST00000538909 TRIM68Q6AZZ1 485 aa3.17□□□□□ -1.9
CBX3P4-201ENST00000538909 KCNV1Q6PIU1 500 aa3.17□□□□□ -1.9
CBX3P4-201ENST00000538909 USP53Q70EK8 1073 aa3.17□□□□□ -1.9
CBX3P4-201ENST00000538909 GSPT2Q8IYD1 628 aaKnown RBP3.17□□□□□ -1.9
CBX3P4-201ENST00000538909 FAM169BQ8N8A8 192 aa3.17□□□□□ -1.9
CBX3P4-201ENST00000538909 GIPC2Q8TF65 315 aa3.17□□□□□ -1.9
CBX3P4-201ENST00000538909 LENG9Q96B70 501 aa3.17□□□□□ -1.9
CBX3P4-201ENST00000538909 MIEF2Q96C03 454 aa3.17□□□□□ -1.9
CBX3P4-201ENST00000538909 SHDQ96IW2 340 aa3.17□□□□□ -1.9
CBX3P4-201ENST00000538909 FBXO10Q9UK96 956 aa3.17□□□□□ -1.9
CBX3P4-201ENST00000538909 BAZ1BQ9UIG0 1483 aaKnown RBP3.16□□□□□ -1.9
CBX3P4-201ENST00000538909 PRDM2Q13029 1718 aa3.16□□□□□ -1.9
CBX3P4-201ENST00000538909 MC4RP32245 332 aa3.16□□□□□ -1.9
CBX3P4-201ENST00000538909 EPHA5P54756 1037 aa3.16□□□□□ -1.9
CBX3P4-201ENST00000538909 KRTAP10-6P60371 365 aaPredicted RBP3.16□□□□□ -1.9
CBX3P4-201ENST00000538909 CD83Q01151 205 aa3.16□□□□□ -1.9
CBX3P4-201ENST00000538909 ELAVL1Q15717 326 aaKnown RBP3.16□□□□□ -1.9
CBX3P4-201ENST00000538909 RABL3Q5HYI8 236 aa3.16□□□□□ -1.9
CBX3P4-201ENST00000538909 LDLRAD1Q5T700 205 aa3.16□□□□□ -1.9
CBX3P4-201ENST00000538909 RHOUQ7L0Q8 258 aa3.16□□□□□ -1.9
CBX3P4-201ENST00000538909 BCL2L13Q9BXK5 485 aa3.16□□□□□ -1.9
CBX3P4-201ENST00000538909 PDGFDQ9GZP0 370 aaPredicted RBP3.16□□□□□ -1.9
CBX3P4-201ENST00000538909 PRDM13Q9H4Q3 707 aa3.16□□□□□ -1.9
CBX3P4-201ENST00000538909 INCENPQ9NQS7 918 aa3.16□□□□□ -1.9
CBX3P4-201ENST00000538909 GPR27Q9NS67 375 aa3.16□□□□□ -1.9
CBX3P4-201ENST00000538909 RIC8BQ9NVN3 520 aa3.16□□□□□ -1.9
CBX3P4-201ENST00000538909 RNF7Q9UBF6 113 aa3.16□□□□□ -1.9
CBX3P4-201ENST00000538909 TESQ9UGI8 421 aaKnown RBP3.16□□□□□ -1.9
CBX3P4-201ENST00000538909 A0A0G2JNJ9 132 aa3.15□□□□□ -1.91
CBX3P4-201ENST00000538909 B2RBV5 119 aa3.15□□□□□ -1.91
CBX3P4-201ENST00000538909 B3GALT2O43825 422 aa3.15□□□□□ -1.91
CBX3P4-201ENST00000538909 NR4A1P22736 598 aa3.15□□□□□ -1.91
CBX3P4-201ENST00000538909 PTGS1P23219 599 aa3.15□□□□□ -1.91
CBX3P4-201ENST00000538909 CTGFP29279 349 aa3.15□□□□□ -1.91
CBX3P4-201ENST00000538909 GRIA2P42262 883 aa3.15□□□□□ -1.91
CBX3P4-201ENST00000538909 LCE1AQ5T7P2 110 aa3.15□□□□□ -1.91
CBX3P4-201ENST00000538909 NBPF6Q5VWK0 638 aa3.15□□□□□ -1.91
CBX3P4-201ENST00000538909 FBXO42Q6P3S6 717 aa3.15□□□□□ -1.91
CBX3P4-201ENST00000538909 MICALCLQ6ZW33 695 aa3.15□□□□□ -1.91
CBX3P4-201ENST00000538909 WDR48Q8TAF3 677 aa3.15□□□□□ -1.91
CBX3P4-201ENST00000538909 NBPF4Q96M43 638 aa3.15□□□□□ -1.91
CBX3P4-201ENST00000538909 TOR3AQ9H497 397 aa3.15□□□□□ -1.91
CBX3P4-201ENST00000538909 GALNT8Q9NY28 637 aa3.15□□□□□ -1.91
CBX3P4-201ENST00000538909 Q9UFV3 132 aa3.15□□□□□ -1.91
CBX3P4-201ENST00000538909 DDX41Q9UJV9 622 aaKnown RBP3.15□□□□□ -1.91
CBX3P4-201ENST00000538909 COX11Q9Y6N1 276 aa3.15□□□□□ -1.91
CBX3P4-201ENST00000538909 XDHP47989 1333 aa3.15□□□□□ -1.91
CBX3P4-201ENST00000538909 LAMC3Q9Y6N6 1575 aa3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 FAM90A27PA6NNH2 459 aa3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 ITGB1P05556 798 aa3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 PTPN1P18031 435 aaKnown RBP3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 NASPP49321 788 aaPredicted RBP3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 ATP2C1P98194 919 aaPredicted RBP3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 FANCCQ00597 558 aa3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 ZNF326Q5BKZ1 582 aaKnown RBP3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 HABP4Q5JVS0 413 aaKnown RBP3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 KCNT2Q6UVM3 1135 aa3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 LRSAM1Q6UWE0 723 aa3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 C6orf15Q6UXA7 325 aaPredicted RBP3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 LRRC55Q6ZSA7 311 aa3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 CXXC5Q7LFL8 322 aaKnown RBP3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 MB21D1Q8N884 522 aa3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 SH3RF2Q8TEC5 729 aa3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 KCTD13Q8WZ19 329 aa3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 ANAPC16Q96DE5 110 aa3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 BCL11AQ9H165 835 aa3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 CYP4F11Q9HBI6 524 aa3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 TRPS1Q9UHF7 1281 aa3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 FZD1Q9UP38 647 aa3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 CFTRP13569 1480 aa3.14□□□□□ -1.91
CBX3P4-201ENST00000538909 KLRG2A4D1S0 409 aaPredicted RBP3.13□□□□□ -1.91
CBX3P4-201ENST00000538909 PMS2P1A4D2B8 440 aa3.13□□□□□ -1.91
CBX3P4-201ENST00000538909 MYADML2A6NDP7 307 aa3.13□□□□□ -1.91
CBX3P4-201ENST00000538909 IKBKBO14920 756 aa3.13□□□□□ -1.91
CBX3P4-201ENST00000538909 SUSD5O60279 629 aa3.13□□□□□ -1.91
CBX3P4-201ENST00000538909 PTH2RP49190 550 aa3.13□□□□□ -1.91
CBX3P4-201ENST00000538909 SMAD3P84022 425 aaKnown RBP3.13□□□□□ -1.91
CBX3P4-201ENST00000538909 ADAM15Q13444 863 aa3.13□□□□□ -1.91
CBX3P4-201ENST00000538909 MOGSQ13724 837 aa3.13□□□□□ -1.91
CBX3P4-201ENST00000538909 KIZQ2M2Z5 673 aa3.13□□□□□ -1.91
CBX3P4-201ENST00000538909 LBX2Q6XYB7 198 aa3.13□□□□□ -1.91
CBX3P4-201ENST00000538909 HDGFL2Q7Z4V5 671 aaPredicted RBP3.13□□□□□ -1.91
CBX3P4-201ENST00000538909 THAP3Q8WTV1 239 aaPredicted RBP3.13□□□□□ -1.91
CBX3P4-201ENST00000538909 RABGGTAQ92696 567 aa3.13□□□□□ -1.91
CBX3P4-201ENST00000538909 GPRASP2Q96D09 838 aa3.13□□□□□ -1.91
CBX3P4-201ENST00000538909 WNK4Q96J92 1243 aa3.13□□□□□ -1.91
CBX3P4-201ENST00000538909 RPL10LQ96L21 214 aaKnown RBP3.13□□□□□ -1.91
CBX3P4-201ENST00000538909 IER2Q9BTL4 223 aa3.13□□□□□ -1.91
CBX3P4-201ENST00000538909 TRAIPQ9BWF2 469 aa3.13□□□□□ -1.91
CBX3P4-201ENST00000538909 CCDC88BA6NC98 1476 aa3.13□□□□□ -1.91
CBX3P4-201ENST00000538909 THOC2Q8NI27 1593 aaKnown RBP3.12□□□□□ -1.91
CBX3P4-201ENST00000538909 TCRBV5S4A2TA0A5A2 114 aa3.12□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms