RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 CLASRPQ8N2M8 674 aaKnown RBP7.56□□□□□ -1.2
CD44-237ENST00000534082 RGS22Q8NE09 1264 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 RHPN1Q8TCX5 695 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 SYTL5Q8TDW5 730 aaPredicted RBP7.56□□□□□ -1.2
CD44-237ENST00000534082 LMBR1Q8WVP7 490 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 FRAT1Q92837 279 aaPredicted RBP7.56□□□□□ -1.2
CD44-237ENST00000534082 TAAR1Q96RJ0 339 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 IWS1Q96ST2 819 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 RMDN3Q96TC7 470 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 TCF25Q9BQ70 676 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 TMUB1Q9BVT8 246 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 GPCPD1Q9NPB8 672 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 ENTPD7Q9NQZ7 604 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 TMEM260Q9NX78 707 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 DBR1Q9UK59 544 aaKnown RBP7.56□□□□□ -1.2
CD44-237ENST00000534082 USTQ9Y2C2 406 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 SUPT16HQ9Y5B9 1047 aaKnown RBP7.56□□□□□ -1.2
CD44-237ENST00000534082 HCFC2Q9Y5Z7 792 aa7.56□□□□□ -1.2
CD44-237ENST00000534082 SMG1Q96Q15 3661 aaKnown RBP7.55□□□□□ -1.2
CD44-237ENST00000534082 MYH7BA7E2Y1 1941 aa7.55□□□□□ -1.2
CD44-237ENST00000534082 TSPY2A6NKD2 308 aa7.55□□□□□ -1.2
CD44-237ENST00000534082 SPTLC1O15269 473 aa7.55□□□□□ -1.2
CD44-237ENST00000534082 EOMESO95936 686 aa7.55□□□□□ -1.2
CD44-237ENST00000534082 ADH1BP00325 375 aa7.55□□□□□ -1.2
CD44-237ENST00000534082 DCNP07585 359 aaKnown RBP7.55□□□□□ -1.2
CD44-237ENST00000534082 STAG3L1P0CL83 205 aa7.55□□□□□ -1.2
CD44-237ENST00000534082 UBA1P22314 1058 aaKnown RBP7.55□□□□□ -1.2
CD44-237ENST00000534082 FBXO47Q5MNV8 452 aa7.55□□□□□ -1.2
CD44-237ENST00000534082 RARS2Q5T160 578 aaKnown RBP7.55□□□□□ -1.2
CD44-237ENST00000534082 KIAA1841Q6NSI8 718 aa7.55□□□□□ -1.2
CD44-237ENST00000534082 TSHZ1Q6ZSZ6 1077 aa7.55□□□□□ -1.2
CD44-237ENST00000534082 TRMT2AQ8IZ69 625 aaKnown RBP7.55□□□□□ -1.2
CD44-237ENST00000534082 TBC1D5Q92609 795 aa7.55□□□□□ -1.2
CD44-237ENST00000534082 BCL11AQ9H165 835 aa7.55□□□□□ -1.2
CD44-237ENST00000534082 CYP26B1Q9NR63 512 aa7.55□□□□□ -1.2
CD44-237ENST00000534082 AAASQ9NRG9 546 aa7.55□□□□□ -1.2
CD44-237ENST00000534082 IL17RBQ9NRM6 502 aa7.55□□□□□ -1.2
CD44-237ENST00000534082 ANGPTL2Q9UKU9 493 aa7.55□□□□□ -1.2
CD44-237ENST00000534082 USP18Q9UMW8 372 aa7.55□□□□□ -1.2
CD44-237ENST00000534082 FLNBO75369 2602 aaKnown RBP7.55□□□□□ -1.2
CD44-237ENST00000534082 WDFY3Q8IZQ1 3526 aa7.55□□□□□ -1.2
CD44-237ENST00000534082 DENND4AQ7Z401 1863 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 KRBA1A5PL33 1030 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 GPAA1O43292 621 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 NARSO43776 548 aaKnown RBP7.54□□□□□ -1.2
CD44-237ENST00000534082 APPP05067 770 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 SLC3A2P08195 630 aaKnown RBP7.54□□□□□ -1.2
CD44-237ENST00000534082 SCG2P13521 617 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 ATP5JP18859 108 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 GNAT2P19087 354 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 IBSPP21815 317 aaPredicted RBP7.54□□□□□ -1.2
CD44-237ENST00000534082 CD52P31358 61 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 ADAM17P78536 824 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 LAPTM4AQ15012 233 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 HSP90AB4PQ58FF6 505 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 ARHGEF16Q5VV41 709 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 XRRA1Q6P2D8 792 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 CEP85Q6P2H3 762 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 RUFY4Q6ZNE9 571 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 RTN4RL1Q86UN2 441 aaPredicted RBP7.54□□□□□ -1.2
CD44-237ENST00000534082 TRIM50Q86XT4 487 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 C1orf210Q8IVY1 113 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 SCUBE3Q8IX30 993 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 COLGALT1Q8NBJ5 622 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 SECISBP2LQ93073 1101 aaKnown RBP7.54□□□□□ -1.2
CD44-237ENST00000534082 OSBP2Q969R2 916 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 ACSF2Q96CM8 615 aaPredicted RBP7.54□□□□□ -1.2
CD44-237ENST00000534082 FTHL17Q9BXU8 183 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 AGO3Q9H9G7 860 aaKnown RBP7.54□□□□□ -1.2
CD44-237ENST00000534082 TBC1D17Q9HA65 648 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 MLXIPQ9HAP2 919 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 NGRNQ9NPE2 291 aaKnown RBP7.54□□□□□ -1.2
CD44-237ENST00000534082 PXMP2Q9NR77 195 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 DLGAP2Q9P1A6 1054 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 LRFN2Q9ULH4 789 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 SMG5Q9UPR3 1016 aaKnown RBP7.54□□□□□ -1.2
CD44-237ENST00000534082 LZTS1Q9Y250 596 aa7.54□□□□□ -1.2
CD44-237ENST00000534082 GCN1Q92616 2671 aaKnown RBP7.54□□□□□ -1.2
CD44-237ENST00000534082 SOBPA7XYQ1 873 aa7.53□□□□□ -1.2
CD44-237ENST00000534082 NOP56O00567 594 aaKnown RBP7.53□□□□□ -1.2
CD44-237ENST00000534082 NR3C2P08235 984 aa7.53□□□□□ -1.2
CD44-237ENST00000534082 PDHBP11177 359 aa7.53□□□□□ -1.2
CD44-237ENST00000534082 SLC19A1P41440 591 aa7.53□□□□□ -1.2
CD44-237ENST00000534082 NOVP48745 357 aa7.53□□□□□ -1.2
CD44-237ENST00000534082 PPARAQ07869 468 aa7.53□□□□□ -1.2
CD44-237ENST00000534082 FUT2Q10981 343 aa7.53□□□□□ -1.2
CD44-237ENST00000534082 ATAT1Q5SQI0 421 aa7.53□□□□□ -1.2
CD44-237ENST00000534082 TAF2Q6P1X5 1199 aa7.53□□□□□ -1.2
CD44-237ENST00000534082 KCNV1Q6PIU1 500 aa7.53□□□□□ -1.2
CD44-237ENST00000534082 CCDC149Q6ZUS6 474 aa7.53□□□□□ -1.2
CD44-237ENST00000534082 RSPH3Q86UC2 560 aa7.53□□□□□ -1.2
CD44-237ENST00000534082 IFNL3Q8IZI9 196 aa7.53□□□□□ -1.2
CD44-237ENST00000534082 C12orf76Q8N812 135 aaPredicted RBP7.53□□□□□ -1.2
CD44-237ENST00000534082 MRPS27Q92552 414 aaKnown RBP7.53□□□□□ -1.2
CD44-237ENST00000534082 APPBP2Q92624 585 aa7.53□□□□□ -1.2
CD44-237ENST00000534082 KIF1BPQ96EK5 621 aa7.53□□□□□ -1.2
CD44-237ENST00000534082 SLC6A16Q9GZN6 736 aa7.53□□□□□ -1.2
CD44-237ENST00000534082 MAF1Q9H063 256 aa7.53□□□□□ -1.2
CD44-237ENST00000534082 KCNK12Q9HB15 430 aa7.53□□□□□ -1.2
CD44-237ENST00000534082 PARD6AQ9NPB6 346 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms