RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 SGPL1O95470 568 aa23.51■■□□□ 1.35
VPS28-212ENST00000530836 ZNF75DP51815 510 aa23.51■■□□□ 1.35
VPS28-212ENST00000530836 STK4Q13043 487 aa23.51■■□□□ 1.35
VPS28-212ENST00000530836 MIS18BP1Q6P0N0 1132 aa23.51■■□□□ 1.35
VPS28-212ENST00000530836 PIGOQ8TEQ8 1089 aa23.51■■□□□ 1.35
VPS28-212ENST00000530836 NELFBQ8WX92 580 aa23.51■■□□□ 1.35
VPS28-212ENST00000530836 MRFAP1L1Q96HT8 127 aa23.51■■□□□ 1.35
VPS28-212ENST00000530836 FANCLQ9NW38 375 aa23.51■■□□□ 1.35
VPS28-212ENST00000530836 CTNND2Q9UQB3 1225 aa23.51■■□□□ 1.35
VPS28-212ENST00000530836 CDC25BP30305 580 aa23.51■■□□□ 1.35
VPS28-212ENST00000530836 ADCYAP1R1P41586 468 aa23.51■■□□□ 1.35
VPS28-212ENST00000530836 GJA8P48165 433 aa23.51■■□□□ 1.35
VPS28-212ENST00000530836 COASYQ13057 564 aa23.51■■□□□ 1.35
VPS28-212ENST00000530836 GIT2Q14161 759 aa23.51■■□□□ 1.35
VPS28-212ENST00000530836 TPD52L1Q16890 204 aaPredicted RBP23.51■■□□□ 1.35
VPS28-212ENST00000530836 RINT1Q6NUQ1 792 aa23.51■■□□□ 1.35
VPS28-212ENST00000530836 GUF1Q8N442 669 aaKnown RBP23.51■■□□□ 1.35
VPS28-212ENST00000530836 U2AF1L4Q8WU68 220 aaKnown RBP23.51■■□□□ 1.35
VPS28-212ENST00000530836 SCFD2Q8WU76 684 aa23.51■■□□□ 1.35
VPS28-212ENST00000530836 HSD3B7Q9H2F3 369 aa23.51■■□□□ 1.35
VPS28-212ENST00000530836 BRCA2P51587 3418 aa23.5■■□□□ 1.35
VPS28-212ENST00000530836 KIAA1217Q5T5P2 1943 aa23.5■■□□□ 1.35
VPS28-212ENST00000530836 ARHGEF35A5YM69 484 aa23.5■■□□□ 1.35
VPS28-212ENST00000530836 GAP43P17677 238 aa23.5■■□□□ 1.35
VPS28-212ENST00000530836 TNFAIP2Q03169 654 aa23.5■■□□□ 1.35
VPS28-212ENST00000530836 FAM26FQ5R3K3 315 aa23.5■■□□□ 1.35
VPS28-212ENST00000530836 TRIM44Q96DX7 344 aaPredicted RBP23.5■■□□□ 1.35
VPS28-212ENST00000530836 MED15Q96RN5 788 aa23.5■■□□□ 1.35
VPS28-212ENST00000530836 CRISPLD2Q9H0B8 497 aa23.5■■□□□ 1.35
VPS28-212ENST00000530836 ANKEF1Q9NU02 776 aa23.5■■□□□ 1.35
VPS28-212ENST00000530836 WRAP73Q9P2S5 460 aaPredicted RBP23.5■■□□□ 1.35
VPS28-212ENST00000530836 ODF2LQ9ULJ1 636 aa23.5■■□□□ 1.35
VPS28-212ENST00000530836 COL4A3BPQ9Y5P4 624 aa23.5■■□□□ 1.35
VPS28-212ENST00000530836 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.49■■□□□ 1.35
VPS28-212ENST00000530836 CBFA2T2O43439 604 aa23.49■■□□□ 1.35
VPS28-212ENST00000530836 TBCAO75347 108 aaKnown RBP23.49■■□□□ 1.35
VPS28-212ENST00000530836 RARBP10826 455 aa23.49■■□□□ 1.35
VPS28-212ENST00000530836 ZNF18P17022 549 aa23.49■■□□□ 1.35
VPS28-212ENST00000530836 ACTR2P61160 394 aa23.49■■□□□ 1.35
VPS28-212ENST00000530836 HERC4Q5GLZ8 1057 aaPredicted RBP23.49■■□□□ 1.35
VPS28-212ENST00000530836 FOXR2Q6PJQ5 311 aa23.49■■□□□ 1.35
VPS28-212ENST00000530836 C1orf186Q6ZWK4 172 aa23.49■■□□□ 1.35
VPS28-212ENST00000530836 KIAA0895Q8NCT3 520 aa23.49■■□□□ 1.35
VPS28-212ENST00000530836 ADCY6O43306 1168 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 DUSP11O75319 330 aaKnown RBP23.48■■□□□ 1.35
VPS28-212ENST00000530836 ATG7O95352 703 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 SMPD1P17405 629 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 CAPN2P17655 700 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 CCNE1P24864 410 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 GUCY2CP25092 1073 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 YWHABP31946 246 aaKnown RBP23.48■■□□□ 1.35
VPS28-212ENST00000530836 HS1BP3Q53T59 392 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 ABHD15Q6UXT9 468 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 OTUD6AQ7L8S5 288 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 NOC3LQ8WTT2 800 aaKnown RBP23.48■■□□□ 1.35
VPS28-212ENST00000530836 REEP2Q9BRK0 252 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 TIPINQ9BVW5 301 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 SLC39A2Q9NP94 309 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 SEL1LQ9UBV2 794 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 OGDHLQ9ULD0 1010 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 GNEQ9Y223 722 aaKnown RBP23.48■■□□□ 1.35
VPS28-212ENST00000530836 MCM3APO60318 1980 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 GOLGA6L6A8MZA4 724 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 TFRCP02786 760 aaKnown RBP23.48■■□□□ 1.35
VPS28-212ENST00000530836 CDK11BP21127 795 aaKnown RBP23.48■■□□□ 1.35
VPS28-212ENST00000530836 UBA1P22314 1058 aaKnown RBP23.48■■□□□ 1.35
VPS28-212ENST00000530836 STX17P56962 302 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 SP2Q02086 613 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 SPAG1Q07617 926 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 TTLL4Q14679 1199 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 DUSP28Q4G0W2 176 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 CCDC62Q6P9F0 684 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 P2RX5Q93086 422 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 CCDC43Q96MW1 224 aaKnown RBP23.48■■□□□ 1.35
VPS28-212ENST00000530836 MAPK8IP1Q9UQF2 711 aa23.48■■□□□ 1.35
VPS28-212ENST00000530836 LRRC37A2A6NM11 1700 aa23.47■■□□□ 1.35
VPS28-212ENST00000530836 TPM3P06753 285 aa23.47■■□□□ 1.35
VPS28-212ENST00000530836 TXNP10599 105 aaKnown RBP23.47■■□□□ 1.35
VPS28-212ENST00000530836 FANCCQ00597 558 aa23.47■■□□□ 1.35
VPS28-212ENST00000530836 TMEM63BQ5T3F8 832 aa23.47■■□□□ 1.35
VPS28-212ENST00000530836 METTL7BQ6UX53 244 aa23.47■■□□□ 1.35
VPS28-212ENST00000530836 CYFIP1Q7L576 1253 aa23.47■■□□□ 1.35
VPS28-212ENST00000530836 LENG1Q96BZ8 264 aaPredicted RBP23.47■■□□□ 1.35
VPS28-212ENST00000530836 RUSC1Q9BVN2 902 aa23.47■■□□□ 1.35
VPS28-212ENST00000530836 Q9Y3F1 56 aa23.47■■□□□ 1.35
VPS28-212ENST00000530836 NPHP3-ACAD11A0A0J9YXS1 232 aa23.46■■□□□ 1.35
VPS28-212ENST00000530836 ARIH2O95376 493 aa23.46■■□□□ 1.35
VPS28-212ENST00000530836 SERPINC1P01008 464 aa23.46■■□□□ 1.35
VPS28-212ENST00000530836 SUPT20HL2P0C7V6 817 aa23.46■■□□□ 1.35
VPS28-212ENST00000530836 RARRES1P49788 294 aa23.46■■□□□ 1.35
VPS28-212ENST00000530836 CDKAL1Q5VV42 579 aa23.46■■□□□ 1.35
VPS28-212ENST00000530836 CENPPQ6IPU0 288 aa23.46■■□□□ 1.35
VPS28-212ENST00000530836 MYOCDQ8IZQ8 938 aa23.46■■□□□ 1.35
VPS28-212ENST00000530836 CTAGE1Q96RT6 745 aa23.46■■□□□ 1.35
VPS28-212ENST00000530836 XPNPEP3Q9NQH7 507 aa23.46■■□□□ 1.35
VPS28-212ENST00000530836 OLFML3Q9NRN5 406 aa23.46■■□□□ 1.35
VPS28-212ENST00000530836 GABBR1Q9UBS5 961 aa23.46■■□□□ 1.35
VPS28-212ENST00000530836 DDX41Q9UJV9 622 aaKnown RBP23.46■■□□□ 1.35
VPS28-212ENST00000530836 PCDHA2Q9Y5H9 948 aa23.46■■□□□ 1.35
VPS28-212ENST00000530836 NKRFO15226 690 aaKnown RBP eCLIP23.45■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms