RNA–Protein interactions for RNA: ENST00000529563.5

USH1C-208, Transcript of USH1 protein network component harmonin, human

TSL 2

Gene USH1C, Length 942 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USH1C-208	ENST00000529563	KLHL23	Q8NBE8	558 aa		13.79	□□□□□ -0.2
USH1C-208	ENST00000529563	ATP8B4	Q8TF62	1192 aa		13.79	□□□□□ -0.2
USH1C-208	ENST00000529563	ZNF577	Q9BSK1	485 aa		13.79	□□□□□ -0.2
USH1C-208	ENST00000529563	RC3H2	Q9HBD1	1191 aa	Known RBP	13.79	□□□□□ -0.2
USH1C-208	ENST00000529563	C6orf50	Q9HD87	102 aa		13.79	□□□□□ -0.2
USH1C-208	ENST00000529563	BRPF3	Q9ULD4	1205 aa		13.79	□□□□□ -0.2
USH1C-208	ENST00000529563	TBKBP1	A7MCY6	615 aa		13.78	□□□□□ -0.2
USH1C-208	ENST00000529563	IPO5	O00410	1097 aa	Known RBP	13.78	□□□□□ -0.2
USH1C-208	ENST00000529563	GPR182	O15218	404 aa		13.78	□□□□□ -0.2
USH1C-208	ENST00000529563	MBTPS2	O43462	519 aa		13.78	□□□□□ -0.2
USH1C-208	ENST00000529563	ITGB1	P05556	798 aa		13.78	□□□□□ -0.2
USH1C-208	ENST00000529563	NRIP1	P48552	1158 aa		13.78	□□□□□ -0.2
USH1C-208	ENST00000529563	SARS	P49591	514 aa	Known RBP	13.78	□□□□□ -0.2
USH1C-208	ENST00000529563	GATM	P50440	423 aa		13.78	□□□□□ -0.2
USH1C-208	ENST00000529563	SET	Q01105	290 aa	Predicted RBP	13.78	□□□□□ -0.2
USH1C-208	ENST00000529563	SMAD2	Q15796	467 aa	Known RBP	13.78	□□□□□ -0.2
USH1C-208	ENST00000529563	MCTP2	Q6DN12	878 aa		13.78	□□□□□ -0.2
USH1C-208	ENST00000529563	RTN4RL1	Q86UN2	441 aa	Predicted RBP	13.78	□□□□□ -0.2
USH1C-208	ENST00000529563	THNSL1	Q8IYQ7	743 aa		13.78	□□□□□ -0.2
USH1C-208	ENST00000529563	POF1B	Q8WVV4	589 aa		13.78	□□□□□ -0.2
USH1C-208	ENST00000529563	ADAM2	Q99965	735 aa		13.78	□□□□□ -0.2
USH1C-208	ENST00000529563	C1orf112	Q9NSG2	853 aa		13.78	□□□□□ -0.2
USH1C-208	ENST00000529563	COL1A2	P08123	1366 aa		13.78	□□□□□ -0.2
USH1C-208	ENST00000529563	TTC3	P53804	2025 aa		13.78	□□□□□ -0.2
USH1C-208	ENST00000529563	LINC01565	O15544	149 aa		13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	ATG7	O95352	703 aa		13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	CCNE2	O96020	404 aa		13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	PSAP	P07602	524 aa		13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	LINC00271	P0C7V0	271 aa		13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	PSMA5	P28066	241 aa		13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	GNA11	P29992	359 aa		13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	LTBR	P36941	435 aa		13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	EXOSC10	Q01780	885 aa	Known RBP	13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	DLX2	Q07687	328 aa	Predicted RBP	13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	MYO7A	Q13402	2215 aa		13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	COL19A1	Q14993	1142 aa		13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	KIZ	Q2M2Z5	673 aa		13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	CTC1	Q2NKJ3	1217 aa		13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	ABHD15	Q6UXT9	468 aa		13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	CCDC60	Q8IWA6	550 aa	Predicted RBP	13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	REXO1	Q8N1G1	1221 aa	Known RBP	13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	SPPL3	Q8TCT6	385 aa		13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	SCLT1	Q96NL6	688 aa		13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	MAP7D2	Q96T17	732 aa		13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	TLE6	Q9H808	572 aa		13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	ATP6V0A4	Q9HBG4	840 aa		13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	TBC1D22B	Q9NU19	505 aa		13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	ST3GAL5	Q9UNP4	418 aa		13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	CEP131	Q9UPN4	1083 aa		13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	NOC2L	Q9Y3T9	749 aa	Known RBP	13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	KDM3A	Q9Y4C1	1321 aa		13.77	□□□□□ -0.21
USH1C-208	ENST00000529563	FAM86B1	E9PN63	330 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	EPB41L2	O43491	1005 aa	Known RBP	13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	TBX10	O75333	385 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	FAM86B2	P0C5J1	330 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	SRGAP2B	P0DMP2	458 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	TMOD1	P28289	359 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	CDC27	P30260	824 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	IRS1	P35568	1242 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	RCAN1	P53805	252 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	APOBR	Q0VD83	1088 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	ADAM15	Q13444	863 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	PFKFB3	Q16875	520 aa	Predicted RBP	13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	ADCK5	Q3MIX3	580 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	PRR16	Q569H4	304 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	FAM43B	Q6ZT52	329 aa	Predicted RBP	13.76	□□□□□ -0.21
USH1C-208	ENST00000529563		Q6ZUG5	572 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	SLC24A5	Q71RS6	500 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	ADGRD2	Q7Z7M1	963 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	SMAP1	Q8IYB5	467 aa	Predicted RBP	13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	RASEF	Q8IZ41	740 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	KIAA0319L	Q8IZA0	1049 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	ABI1	Q8IZP0	508 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	EFHB	Q8N7U6	833 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	BICD2	Q8TD16	824 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	BBX	Q8WY36	941 aa	Predicted RBP	13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	OSMR	Q99650	979 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	TMX1	Q9H3N1	280 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	ERVK-5	Q9HDB9	667 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	GABBR1	Q9UBS5	961 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	MUTYH	Q9UIF7	546 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	AKT3	Q9Y243	479 aa		13.76	□□□□□ -0.21
USH1C-208	ENST00000529563	IGKV6D-21	A0A0A0MT36	114 aa		13.75	□□□□□ -0.21
USH1C-208	ENST00000529563	C19orf67	A6NJJ6	358 aa		13.75	□□□□□ -0.21
USH1C-208	ENST00000529563	VTN	P04004	478 aa		13.75	□□□□□ -0.21
USH1C-208	ENST00000529563	ZSCAN20	P17040	1043 aa	Predicted RBP	13.75	□□□□□ -0.21
USH1C-208	ENST00000529563	DNAJB1	P25685	340 aa		13.75	□□□□□ -0.21
USH1C-208	ENST00000529563	ADD1	P35611	737 aa	Known RBP	13.75	□□□□□ -0.21
USH1C-208	ENST00000529563	CLK2	P49760	499 aa	Known RBP	13.75	□□□□□ -0.21
USH1C-208	ENST00000529563	CRYBB1	P53674	252 aa	Predicted RBP	13.75	□□□□□ -0.21
USH1C-208	ENST00000529563	FUT2	Q10981	343 aa		13.75	□□□□□ -0.21
USH1C-208	ENST00000529563	ZNF746	Q6NUN9	644 aa	Predicted RBP	13.75	□□□□□ -0.21
USH1C-208	ENST00000529563	BLOC1S2	Q6QNY1	142 aa		13.75	□□□□□ -0.21
USH1C-208	ENST00000529563	RNF169	Q8NCN4	708 aa		13.75	□□□□□ -0.21
USH1C-208	ENST00000529563	CCDC148	Q8NFR7	591 aa		13.75	□□□□□ -0.21
USH1C-208	ENST00000529563	BRF1	Q92994	677 aa		13.75	□□□□□ -0.21
USH1C-208	ENST00000529563	FAM167A	Q96KS9	214 aa		13.75	□□□□□ -0.21
USH1C-208	ENST00000529563	MFSD14A	Q96MC6	490 aa		13.75	□□□□□ -0.21
USH1C-208	ENST00000529563	JAKMIP1	Q96N16	626 aa	Known RBP	13.75	□□□□□ -0.21
USH1C-208	ENST00000529563	CDHR5	Q9HBB8	845 aa		13.75	□□□□□ -0.21

Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms