RNA–Protein interactions for RNA: ENST00000527916.1

CPSF1-203, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 506 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-203ENST00000527916 PSTPIP2Q9H939 334 aa12.04□□□□□ -0.48
CPSF1-203ENST00000527916 AGO3Q9H9G7 860 aaKnown RBP12.04□□□□□ -0.48
CPSF1-203ENST00000527916 ERAP1Q9NZ08 941 aa12.04□□□□□ -0.48
CPSF1-203ENST00000527916 SORCS3Q9UPU3 1222 aa12.04□□□□□ -0.48
CPSF1-203ENST00000527916 PCDHGC5Q9Y5F6 944 aa12.04□□□□□ -0.48
CPSF1-203ENST00000527916 TPRP12270 2363 aaKnown RBP12.04□□□□□ -0.48
CPSF1-203ENST00000527916 KIAA1671Q9BY89 1806 aa12.03□□□□□ -0.48
CPSF1-203ENST00000527916 MBLAC1A4D2B0 266 aaPredicted RBP12.03□□□□□ -0.48
CPSF1-203ENST00000527916 RXRAP19793 462 aa12.03□□□□□ -0.48
CPSF1-203ENST00000527916 TCF7P36402 384 aaPredicted RBP12.03□□□□□ -0.48
CPSF1-203ENST00000527916 TECP42680 631 aa12.03□□□□□ -0.48
CPSF1-203ENST00000527916 PAK2Q13177 524 aa12.03□□□□□ -0.48
CPSF1-203ENST00000527916 ADCK5Q3MIX3 580 aa12.03□□□□□ -0.48
CPSF1-203ENST00000527916 USP17L6PQ6QN14 398 aa12.03□□□□□ -0.48
CPSF1-203ENST00000527916 TMEM184AQ6ZMB5 413 aa12.03□□□□□ -0.48
CPSF1-203ENST00000527916 ADSSL1Q8N142 457 aa12.03□□□□□ -0.48
CPSF1-203ENST00000527916 CMTR1Q8N1G2 835 aaKnown RBP12.03□□□□□ -0.48
CPSF1-203ENST00000527916 LINC01599Q8WXQ3 324 aa12.03□□□□□ -0.48
CPSF1-203ENST00000527916 PIBF1Q8WXW3 757 aa12.03□□□□□ -0.48
CPSF1-203ENST00000527916 GLG1Q92896 1179 aa12.03□□□□□ -0.48
CPSF1-203ENST00000527916 TNPO1Q92973 898 aaKnown RBP12.03□□□□□ -0.48
CPSF1-203ENST00000527916 LRRC2Q9BYS8 371 aa12.03□□□□□ -0.48
CPSF1-203ENST00000527916 MFSD1Q9H3U5 465 aa12.03□□□□□ -0.48
CPSF1-203ENST00000527916 TSHZ2Q9NRE2 1034 aa12.03□□□□□ -0.48
CPSF1-203ENST00000527916 RTEL1Q9NZ71 1219 aa12.03□□□□□ -0.48
CPSF1-203ENST00000527916 PCDHB7Q9Y5E2 793 aa12.03□□□□□ -0.48
CPSF1-203ENST00000527916 DOCK5Q9H7D0 1870 aa12.02□□□□□ -0.48
CPSF1-203ENST00000527916 EPG5Q9HCE0 2579 aa12.02□□□□□ -0.48
CPSF1-203ENST00000527916 RRN3P2A6NIE6 340 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 MAFGO15525 162 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 ZBTB43O43298 467 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 EPB41L2O43491 1005 aaKnown RBP12.02□□□□□ -0.49
CPSF1-203ENST00000527916 FGF18O76093 207 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 MARK3P27448 753 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 HSPA4P34932 840 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 RBM10P98175 930 aaKnown RBP12.02□□□□□ -0.49
CPSF1-203ENST00000527916 SEMA3FQ13275 785 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 ASTLQ6HA08 431 aaPredicted RBP12.02□□□□□ -0.49
CPSF1-203ENST00000527916 ANKRD54Q6NXT1 300 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 FRMD5Q7Z6J6 570 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 RTN4RL1Q86UN2 441 aaPredicted RBP12.02□□□□□ -0.49
CPSF1-203ENST00000527916 NLRX1Q86UT6 975 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 THNSL1Q8IYQ7 743 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 FBXL16Q8N461 479 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 TMEM105Q8N8V8 129 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 VN1R2Q8NFZ6 395 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 RASGRP4Q8TDF6 673 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 CDHR1Q96JP9 859 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 NECTIN4Q96NY8 510 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 FAM49AQ9H0Q0 323 aaPredicted RBP12.02□□□□□ -0.49
CPSF1-203ENST00000527916 S1PR5Q9H228 398 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 SMARCAD1Q9H4L7 1026 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 TMEM260Q9NX78 707 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 PUF60Q9UHX1 559 aaKnown RBP12.02□□□□□ -0.49
CPSF1-203ENST00000527916 BRPF3Q9ULD4 1205 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 PADI3Q9ULW8 664 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 PLXNA4Q9HCM2 1894 aa12.02□□□□□ -0.49
CPSF1-203ENST00000527916 hCG_1984214I3L0E3 225 aa12.01□□□□□ -0.49
CPSF1-203ENST00000527916 SP100P23497 879 aaPredicted RBP12.01□□□□□ -0.49
CPSF1-203ENST00000527916 SARSP49591 514 aaKnown RBP12.01□□□□□ -0.49
CPSF1-203ENST00000527916 CLCN5P51795 746 aa12.01□□□□□ -0.49
CPSF1-203ENST00000527916 ERVFC1P60507 584 aa12.01□□□□□ -0.49
CPSF1-203ENST00000527916 IGBP1P78318 339 aa12.01□□□□□ -0.49
CPSF1-203ENST00000527916 FUT2Q10981 343 aa12.01□□□□□ -0.49
CPSF1-203ENST00000527916 TPRNQ4KMQ1 711 aa12.01□□□□□ -0.49
CPSF1-203ENST00000527916 CES5AQ6NT32 575 aa12.01□□□□□ -0.49
CPSF1-203ENST00000527916 MICU3Q86XE3 530 aa12.01□□□□□ -0.49
CPSF1-203ENST00000527916 CCDC82Q8N4S0 544 aa12.01□□□□□ -0.49
CPSF1-203ENST00000527916 ZNF713Q8N859 430 aaPredicted RBP12.01□□□□□ -0.49
CPSF1-203ENST00000527916 SEPT1Q8WYJ6 367 aa12.01□□□□□ -0.49
CPSF1-203ENST00000527916 GPRASP2Q96D09 838 aa12.01□□□□□ -0.49
CPSF1-203ENST00000527916 LZTS1Q9Y250 596 aa12.01□□□□□ -0.49
CPSF1-203ENST00000527916 TRPV2Q9Y5S1 764 aa12.01□□□□□ -0.49
CPSF1-203ENST00000527916 TBKBP1A7MCY6 615 aa12□□□□□ -0.49
CPSF1-203ENST00000527916 REC8O95072 547 aa12□□□□□ -0.49
CPSF1-203ENST00000527916 BRD1O95696 1058 aa12□□□□□ -0.49
CPSF1-203ENST00000527916 IBSPP21815 317 aaPredicted RBP12□□□□□ -0.49
CPSF1-203ENST00000527916 GATMP50440 423 aa12□□□□□ -0.49
CPSF1-203ENST00000527916 RTN1Q16799 776 aa12□□□□□ -0.49
CPSF1-203ENST00000527916 MARCH8Q5T0T0 291 aa12□□□□□ -0.49
CPSF1-203ENST00000527916 PPP1R18Q6NYC8 613 aa12□□□□□ -0.49
CPSF1-203ENST00000527916 LLGL2Q6P1M3 1020 aa12□□□□□ -0.49
CPSF1-203ENST00000527916 SYCE2Q6PIF2 218 aa12□□□□□ -0.49
CPSF1-203ENST00000527916 CASP10Q92851 521 aa12□□□□□ -0.49
CPSF1-203ENST00000527916 APOL5Q9BWW9 433 aa12□□□□□ -0.49
CPSF1-203ENST00000527916 GLT8D2Q9H1C3 349 aa12□□□□□ -0.49
CPSF1-203ENST00000527916 NGRNQ9NPE2 291 aaKnown RBP12□□□□□ -0.49
CPSF1-203ENST00000527916 ENTPD7Q9NQZ7 604 aa12□□□□□ -0.49
CPSF1-203ENST00000527916 FAM217BQ9NTX9 383 aaPredicted RBP12□□□□□ -0.49
CPSF1-203ENST00000527916 PCDHA6Q9UN73 950 aa12□□□□□ -0.49
CPSF1-203ENST00000527916 PCDHA8Q9Y5H6 950 aa12□□□□□ -0.49
CPSF1-203ENST00000527916 IGSF9BQ9UPX0 1349 aa12□□□□□ -0.49
CPSF1-203ENST00000527916 NCOR2Q9Y618 2525 aa12□□□□□ -0.49
CPSF1-203ENST00000527916 KLF18A0A0U1RQI7 1052 aa11.99□□□□□ -0.49
CPSF1-203ENST00000527916 CCDC196A0A1B0GTZ2 297 aa11.99□□□□□ -0.49
CPSF1-203ENST00000527916 hCG_1642624A0A1W2PR95 340 aa11.99□□□□□ -0.49
CPSF1-203ENST00000527916 DENND3A2RUS2 1198 aa11.99□□□□□ -0.49
CPSF1-203ENST00000527916 SPDYE3A6NKU9 549 aa11.99□□□□□ -0.49
CPSF1-203ENST00000527916 FSCN2O14926 492 aa11.99□□□□□ -0.49
CPSF1-203ENST00000527916 FOSP01100 380 aaPredicted RBP11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms