RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 ADCYAP1R1P41586 468 aa23.29■■□□□ 1.32
VPS28-208ENST00000527797 ZNF131P52739 623 aa23.29■■□□□ 1.32
VPS28-208ENST00000527797 LRRC41Q15345 812 aa23.29■■□□□ 1.32
VPS28-208ENST00000527797 HSDL1Q3SXM5 330 aa23.29■■□□□ 1.32
VPS28-208ENST00000527797 PCYT2Q99447 389 aa23.29■■□□□ 1.32
VPS28-208ENST00000527797 SH2D3AQ9BRG2 576 aa23.29■■□□□ 1.32
VPS28-208ENST00000527797 POLD4Q9HCU8 107 aa23.29■■□□□ 1.32
VPS28-208ENST00000527797 SEL1LQ9UBV2 794 aa23.29■■□□□ 1.32
VPS28-208ENST00000527797 SEPT9Q9UHD8 586 aaPredicted RBP23.29■■□□□ 1.32
VPS28-208ENST00000527797 SFI1A8K8P3 1242 aa23.28■■□□□ 1.32
VPS28-208ENST00000527797 OATP04181 439 aa23.28■■□□□ 1.32
VPS28-208ENST00000527797 CDK11BP21127 795 aaKnown RBP23.28■■□□□ 1.32
VPS28-208ENST00000527797 MAP2K2P36507 400 aa23.28■■□□□ 1.32
VPS28-208ENST00000527797 PSMC4P43686 418 aa23.28■■□□□ 1.32
VPS28-208ENST00000527797 ZNF75DP51815 510 aa23.28■■□□□ 1.32
VPS28-208ENST00000527797 LACTBP83111 547 aaPredicted RBP23.28■■□□□ 1.32
VPS28-208ENST00000527797 IRF5Q13568 498 aa23.28■■□□□ 1.32
VPS28-208ENST00000527797 TMEM63BQ5T3F8 832 aa23.28■■□□□ 1.32
VPS28-208ENST00000527797 OLFML2BQ68BL8 750 aa23.28■■□□□ 1.32
VPS28-208ENST00000527797 IQSEC1Q6DN90 963 aa23.28■■□□□ 1.32
VPS28-208ENST00000527797 OLFML3Q9NRN5 406 aa23.28■■□□□ 1.32
VPS28-208ENST00000527797 SAMSN1Q9NSI8 373 aaKnown RBP23.28■■□□□ 1.32
VPS28-208ENST00000527797 NRBP2Q9NSY0 501 aa23.28■■□□□ 1.32
VPS28-208ENST00000527797 TRIM49BA6NDI0 452 aa23.27■■□□□ 1.32
VPS28-208ENST00000527797 ATP1A3P13637 1013 aa23.27■■□□□ 1.32
VPS28-208ENST00000527797 ZNF18P17022 549 aa23.27■■□□□ 1.32
VPS28-208ENST00000527797 ATP4AP20648 1035 aa23.27■■□□□ 1.32
VPS28-208ENST00000527797 CTGFP29279 349 aa23.27■■□□□ 1.32
VPS28-208ENST00000527797 PMS1P54277 932 aaKnown RBP23.27■■□□□ 1.32
VPS28-208ENST00000527797 ARHGAP1Q07960 439 aa23.27■■□□□ 1.32
VPS28-208ENST00000527797 CENPPQ6IPU0 288 aa23.27■■□□□ 1.32
VPS28-208ENST00000527797 GLIS3Q8NEA6 775 aa23.27■■□□□ 1.32
VPS28-208ENST00000527797 MRPL44Q9H9J2 332 aaKnown RBP23.27■■□□□ 1.32
VPS28-208ENST00000527797 CYP26B1Q9NR63 512 aa23.27■■□□□ 1.32
VPS28-208ENST00000527797 FLRT1Q9NZU1 646 aa23.27■■□□□ 1.32
VPS28-208ENST00000527797 NKRFO15226 690 aaKnown RBP eCLIP23.26■■□□□ 1.31
VPS28-208ENST00000527797 LGR5O75473 907 aa23.26■■□□□ 1.31
VPS28-208ENST00000527797 TBC1D8O95759 1140 aa23.26■■□□□ 1.31
VPS28-208ENST00000527797 FANCCQ00597 558 aa23.26■■□□□ 1.31
VPS28-208ENST00000527797 MAPK7Q13164 816 aa23.26■■□□□ 1.31
VPS28-208ENST00000527797 DUSP28Q4G0W2 176 aa23.26■■□□□ 1.31
VPS28-208ENST00000527797 TTI2Q6NXR4 508 aa23.26■■□□□ 1.31
VPS28-208ENST00000527797 MAEAQ7L5Y9 396 aa23.26■■□□□ 1.31
VPS28-208ENST00000527797 GLG1Q92896 1179 aa23.26■■□□□ 1.31
VPS28-208ENST00000527797 TRIM47Q96LD4 638 aa23.26■■□□□ 1.31
VPS28-208ENST00000527797 FGFBP2Q9BYJ0 223 aa23.26■■□□□ 1.31
VPS28-208ENST00000527797 DOCK5Q9H7D0 1870 aa23.26■■□□□ 1.31
VPS28-208ENST00000527797 SERPINC1P01008 464 aa23.26■■□□□ 1.31
VPS28-208ENST00000527797 CCL14Q16627 93 aa23.26■■□□□ 1.31
VPS28-208ENST00000527797 ANKRD40Q6AI12 368 aa23.26■■□□□ 1.31
VPS28-208ENST00000527797 PLPPR4Q7Z2D5 763 aa23.26■■□□□ 1.31
VPS28-208ENST00000527797 NOC3LQ8WTT2 800 aaKnown RBP23.26■■□□□ 1.31
VPS28-208ENST00000527797 EMID1Q96A84 441 aaPredicted RBP23.26■■□□□ 1.31
VPS28-208ENST00000527797 FAM167AQ96KS9 214 aa23.26■■□□□ 1.31
VPS28-208ENST00000527797 DRC1Q96MC2 740 aa23.26■■□□□ 1.31
VPS28-208ENST00000527797 NIFKQ9BYG3 293 aaKnown RBP23.26■■□□□ 1.31
VPS28-208ENST00000527797 SEMA6BQ9H3T3 888 aa23.26■■□□□ 1.31
VPS28-208ENST00000527797 LOXHD1Q8IVV2 1947 aa23.25■■□□□ 1.31
VPS28-208ENST00000527797 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.25■■□□□ 1.31
VPS28-208ENST00000527797 DGAT1O75907 488 aa23.25■■□□□ 1.31
VPS28-208ENST00000527797 SMPD1P17405 629 aa23.25■■□□□ 1.31
VPS28-208ENST00000527797 VEGFBP49765 207 aa23.25■■□□□ 1.31
VPS28-208ENST00000527797 KIF22Q14807 665 aa23.25■■□□□ 1.31
VPS28-208ENST00000527797 CCDC144BQ3MJ40 725 aa23.25■■□□□ 1.31
VPS28-208ENST00000527797 HSP90AA4PQ58FG1 418 aa23.25■■□□□ 1.31
VPS28-208ENST00000527797 ODR4Q5SWX8 454 aa23.25■■□□□ 1.31
VPS28-208ENST00000527797 GJC2Q5T442 439 aaPredicted RBP23.25■■□□□ 1.31
VPS28-208ENST00000527797 CDKAL1Q5VV42 579 aa23.25■■□□□ 1.31
VPS28-208ENST00000527797 DAW1Q8N136 415 aa23.25■■□□□ 1.31
VPS28-208ENST00000527797 SCFD1Q8WVM8 642 aa23.25■■□□□ 1.31
VPS28-208ENST00000527797 TSG101Q99816 390 aa23.25■■□□□ 1.31
VPS28-208ENST00000527797 CFHR5Q9BXR6 569 aa23.25■■□□□ 1.31
VPS28-208ENST00000527797 ARHGAP39Q9C0H5 1083 aa23.25■■□□□ 1.31
VPS28-208ENST00000527797 LARSQ9P2J5 1176 aaKnown RBP23.25■■□□□ 1.31
VPS28-208ENST00000527797 EMSYQ7Z589 1322 aa23.25■■□□□ 1.31
VPS28-208ENST00000527797 MCM3APO60318 1980 aa23.24■■□□□ 1.31
VPS28-208ENST00000527797 SP3Q02447 781 aa23.24■■□□□ 1.31
VPS28-208ENST00000527797 LRRC63Q05C16 580 aa23.24■■□□□ 1.31
VPS28-208ENST00000527797 MTERF2Q49AM1 385 aa23.24■■□□□ 1.31
VPS28-208ENST00000527797 EPM2AIP1Q7L775 607 aaPredicted RBP23.24■■□□□ 1.31
VPS28-208ENST00000527797 FAM178BQ8IXR5 827 aa23.24■■□□□ 1.31
VPS28-208ENST00000527797 PPTC7Q8NI37 304 aa23.24■■□□□ 1.31
VPS28-208ENST00000527797 MRFAP1L1Q96HT8 127 aa23.24■■□□□ 1.31
VPS28-208ENST00000527797 DUSP9Q99956 384 aaKnown RBP23.24■■□□□ 1.31
VPS28-208ENST00000527797 SMARCAD1Q9H4L7 1026 aa23.24■■□□□ 1.31
VPS28-208ENST00000527797 THAP9Q9H5L6 903 aa23.24■■□□□ 1.31
VPS28-208ENST00000527797 IFNKQ9P0W0 207 aa23.24■■□□□ 1.31
VPS28-208ENST00000527797 GCNT3O95395 438 aa23.23■■□□□ 1.31
VPS28-208ENST00000527797 SLC26A2P50443 739 aa23.23■■□□□ 1.31
VPS28-208ENST00000527797 CASP5P51878 434 aa23.23■■□□□ 1.31
VPS28-208ENST00000527797 TNFAIP2Q03169 654 aa23.23■■□□□ 1.31
VPS28-208ENST00000527797 PRAMEF19Q5SWL8 479 aa23.23■■□□□ 1.31
VPS28-208ENST00000527797 FAM102BQ5T8I3 360 aa23.23■■□□□ 1.31
VPS28-208ENST00000527797 FOXR2Q6PJQ5 311 aa23.23■■□□□ 1.31
VPS28-208ENST00000527797 STXBP4Q6ZWJ1 553 aa23.23■■□□□ 1.31
VPS28-208ENST00000527797 ARHGAP30Q7Z6I6 1101 aaPredicted RBP23.23■■□□□ 1.31
VPS28-208ENST00000527797 NELFCDQ8IXH7 590 aa23.23■■□□□ 1.31
VPS28-208ENST00000527797 CSGALNACT2Q8N6G5 542 aa23.23■■□□□ 1.31
VPS28-208ENST00000527797 MCPH1Q8NEM0 835 aa23.23■■□□□ 1.31
VPS28-208ENST00000527797 SRRTQ9BXP5 876 aaKnown RBP23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms