RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 GOLGA8FQ08AF8 430 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 GOLGA8DPQ0D2H9 430 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 EIF2B5Q13144 721 aaKnown RBP6.32□□□□□ -1.4
CD44-225ENST00000527326 ITGA7Q13683 1181 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 TRIM14Q14142 442 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 UBAP2LQ14157 1087 aaKnown RBP6.32□□□□□ -1.4
CD44-225ENST00000527326 CNPY1Q3B7I2 92 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 PDCD4Q53EL6 469 aaKnown RBP6.32□□□□□ -1.4
CD44-225ENST00000527326 PARP10Q53GL7 1025 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 SMUG1Q53HV7 270 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 RNF220Q5VTB9 566 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 DAB2IPQ5VWQ8 1189 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 NEPROQ6NW34 567 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 CYP26C1Q6V0L0 522 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 RAD9BQ6WBX8 426 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 GSPT2Q8IYD1 628 aaKnown RBP6.32□□□□□ -1.4
CD44-225ENST00000527326 FAM186BQ8IYM0 893 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 IQCKQ8N0W5 287 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 SCAIQ8N9R8 606 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 TSEN2Q8NCE0 465 aaKnown RBP6.32□□□□□ -1.4
CD44-225ENST00000527326 GDAP1Q8TB36 358 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 DNAJC9Q8WXX5 260 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 TAF4BQ92750 862 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 RRP36Q96EU6 259 aaKnown RBP6.32□□□□□ -1.4
CD44-225ENST00000527326 CHMP6Q96FZ7 201 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 DCAF5Q96JK2 942 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 UIMC1Q96RL1 719 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 LLPHQ9BRT6 129 aaKnown RBP6.32□□□□□ -1.4
CD44-225ENST00000527326 SPATA16Q9BXB7 569 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 NIFKQ9BYG3 293 aaKnown RBP6.32□□□□□ -1.4
CD44-225ENST00000527326 NACAP1Q9BZK3 213 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 RNPEPL1Q9HAU8 725 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 TMBIM4Q9HC24 238 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 HOXC10Q9NYD6 342 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 NDUFA13Q9P0J0 144 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 ADAM22Q9P0K1 906 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 SAMD15Q9P1V8 674 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 SLC12A6Q9UHW9 1150 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 ATXN7L1Q9ULK2 861 aaPredicted RBP6.32□□□□□ -1.4
CD44-225ENST00000527326 FADS3Q9Y5Q0 445 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 CRYBG1Q9Y4K1 1723 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 MLH3Q9UHC1 1453 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 IQGAP3Q86VI3 1631 aa6.32□□□□□ -1.4
CD44-225ENST00000527326 ITIH6Q6UXX5 1313 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 COL3A1P02461 1466 aaPredicted RBP6.31□□□□□ -1.4
CD44-225ENST00000527326 A0A0J9YVX5 310 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 SHISA8B8ZZ34 492 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 HNRNPRO43390 633 aaKnown RBP6.31□□□□□ -1.4
CD44-225ENST00000527326 BNIP3LO60238 219 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 YEATS4O95619 227 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 CHGBP05060 677 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 ALDH2P05091 517 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 EIF2S1P05198 315 aaKnown RBP6.31□□□□□ -1.4
CD44-225ENST00000527326 PDHA1P08559 390 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 NAT2P11245 290 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 COPB2P35606 906 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 MSH2P43246 934 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 CACNA2D1P54289 1103 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 CSE1LP55060 971 aaKnown RBP6.31□□□□□ -1.4
CD44-225ENST00000527326 NCALDP61601 193 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 PPP2R2AP63151 447 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 TUBA1BP68363 451 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 ZBTB17Q13105 803 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 KPNB1Q14974 876 aaKnown RBP6.31□□□□□ -1.4
CD44-225ENST00000527326 SAFBQ15424 915 aaKnown RBP eCLIP6.31□□□□□ -1.4
CD44-225ENST00000527326 P3H1Q32P28 736 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 RASIP1Q5U651 963 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 KCTD16Q68DU8 428 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.31□□□□□ -1.4
CD44-225ENST00000527326 TUBA1AQ71U36 451 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 TRPM8Q7Z2W7 1104 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 MAP7D3Q8IWC1 876 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 IFT20Q8IY31 132 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 CNTROBQ8N137 903 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 TTC39CQ8N584 583 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 ENDOVQ8N8Q3 282 aaKnown RBP6.31□□□□□ -1.4
CD44-225ENST00000527326 NECAB1Q8N987 351 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 EIF1ADQ8N9N8 165 aaKnown RBP6.31□□□□□ -1.4
CD44-225ENST00000527326 RBBP8NLQ8NC74 664 aaPredicted RBP6.31□□□□□ -1.4
CD44-225ENST00000527326 KCNG4Q8TDN1 519 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 DIS3LQ8TF46 1054 aaKnown RBP6.31□□□□□ -1.4
CD44-225ENST00000527326 BRF1Q92994 677 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 FAM136AQ96C01 138 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 CCDC43Q96MW1 224 aaKnown RBP6.31□□□□□ -1.4
CD44-225ENST00000527326 HNRNPABQ99729 332 aaKnown RBP6.31□□□□□ -1.4
CD44-225ENST00000527326 SIKE1Q9BRV8 207 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 SLC39A3Q9BRY0 314 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 CRISPLD1Q9H336 500 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 RRAGCQ9HB90 399 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 PARVBQ9HBI1 364 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 ARHGEF3Q9NR81 526 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 FAM114A2Q9NRY5 505 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 INTS13Q9NVM9 706 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 CABP1Q9NZU7 370 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 STIM2Q9P246 746 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 SAP30BPQ9UHR5 308 aaKnown RBP6.31□□□□□ -1.4
CD44-225ENST00000527326 GDF2Q9UK05 429 aaPredicted RBP6.31□□□□□ -1.4
CD44-225ENST00000527326 FBXO9Q9UK97 447 aaPredicted RBP6.31□□□□□ -1.4
CD44-225ENST00000527326 WWC3Q9ULE0 1092 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 CHMP2BQ9UQN3 213 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms