RNA–Protein interactions for RNA: ENST00000524023.1

HDAC9-228, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,199 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-228ENST00000524023 BMP3P12645 472 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 ANXA13P27216 316 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 NOP2P46087 812 aaKnown RBP12.11□□□□□ -0.47
HDAC9-228ENST00000524023 SKOR1P84550 965 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 HDLBPQ00341 1268 aaKnown RBP12.11□□□□□ -0.47
HDAC9-228ENST00000524023 KCNA1Q09470 495 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 SF3B2Q13435 895 aaKnown RBP12.11□□□□□ -0.47
HDAC9-228ENST00000524023 CFAP58Q5T655 872 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 BTNL9Q6UXG8 535 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 DNAAF5Q86Y56 855 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 PBKQ96KB5 322 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 TMX4Q9H1E5 349 aaPredicted RBP12.11□□□□□ -0.47
HDAC9-228ENST00000524023 GOLPH3Q9H4A6 298 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 OLFML3Q9NRN5 406 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 RGL1Q9NZL6 768 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 GCNT4Q9P109 453 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 GRIN2DO15399 1336 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 ATP8B3O60423 1300 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 COL11A2P13942 1736 aaPredicted RBP12.11□□□□□ -0.47
HDAC9-228ENST00000524023 SCN9AQ15858 1988 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 AFF2P51816 1311 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 ZNF233A6NK53 670 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 EIF3HO15372 352 aaKnown RBP eCLIP12.11□□□□□ -0.47
HDAC9-228ENST00000524023 TGFB1I1O43294 461 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 NPM3O75607 178 aaKnown RBP12.11□□□□□ -0.47
HDAC9-228ENST00000524023 KRT14P02533 472 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 ZNF76P36508 570 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 GUCY2FP51841 1108 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 GNGT1P63211 74 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 TRADDQ15628 312 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 DNAJC21Q5F1R6 531 aaKnown RBP12.11□□□□□ -0.47
HDAC9-228ENST00000524023 RINT1Q6NUQ1 792 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 KLHL7Q8IXQ5 586 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 WHAMMQ8TF30 809 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 SCFD2Q8WU76 684 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 PIK3R5Q8WYR1 880 aa12.11□□□□□ -0.47
HDAC9-228ENST00000524023 IGLV3-22A0A075B6J6 115 aa12.1□□□□□ -0.47
HDAC9-228ENST00000524023 GTPBP10A4D1E9 387 aaKnown RBP12.1□□□□□ -0.47
HDAC9-228ENST00000524023 ZBTB48P10074 688 aaPredicted RBP12.1□□□□□ -0.47
HDAC9-228ENST00000524023 GAP43P17677 238 aa12.1□□□□□ -0.47
HDAC9-228ENST00000524023 POLD1P28340 1107 aa12.1□□□□□ -0.47
HDAC9-228ENST00000524023 CORO7P57737 925 aa12.1□□□□□ -0.47
HDAC9-228ENST00000524023 FKBP1AP62942 108 aaKnown RBP12.1□□□□□ -0.47
HDAC9-228ENST00000524023 JAG1P78504 1218 aa12.1□□□□□ -0.47
HDAC9-228ENST00000524023 DACT2Q5SW24 774 aa12.1□□□□□ -0.47
HDAC9-228ENST00000524023 MEX3CQ5U5Q3 659 aaKnown RBP12.1□□□□□ -0.47
HDAC9-228ENST00000524023 STRIP1Q5VSL9 837 aa12.1□□□□□ -0.47
HDAC9-228ENST00000524023 CD302Q8IX05 232 aa12.1□□□□□ -0.47
HDAC9-228ENST00000524023 KCTD17Q8N5Z5 321 aa12.1□□□□□ -0.47
HDAC9-228ENST00000524023 TPCN2Q8NHX9 752 aa12.1□□□□□ -0.47
HDAC9-228ENST00000524023 ACTRT1Q8TDG2 376 aa12.1□□□□□ -0.47
HDAC9-228ENST00000524023 BORCS6Q96GS4 357 aa12.1□□□□□ -0.47
HDAC9-228ENST00000524023 MASTLQ96GX5 879 aa12.1□□□□□ -0.47
HDAC9-228ENST00000524023 HSD17B14Q9BPX1 270 aa12.1□□□□□ -0.47
HDAC9-228ENST00000524023 PCDHB13Q9Y5F0 798 aa12.1□□□□□ -0.47
HDAC9-228ENST00000524023 ZMYM2Q9UBW7 1377 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 ZNF646O15015 1829 aaPredicted RBP12.09□□□□□ -0.47
HDAC9-228ENST00000524023 SFI1A8K8P3 1242 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 PIK3CDO00329 1044 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 EIF3DO15371 548 aaKnown RBP eCLIP12.09□□□□□ -0.47
HDAC9-228ENST00000524023 CEP104O60308 925 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 H2AFZP0C0S5 128 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 PDE6BP35913 854 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 CTTNQ14247 550 aaKnown RBP12.09□□□□□ -0.47
HDAC9-228ENST00000524023 SLC15A2Q16348 729 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 SKIDA1Q1XH10 827 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 GJB7Q6PEY0 223 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 H2AFVQ71UI9 128 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 VPS36Q86VN1 386 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 NLGN1Q8N2Q7 840 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 PIGOQ8TEQ8 1089 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 ISCUQ9H1K1 167 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 A0A0A6YYK5 440 aaPredicted RBP12.09□□□□□ -0.47
HDAC9-228ENST00000524023 DDX3XO00571 662 aaKnown RBP eCLIP12.09□□□□□ -0.47
HDAC9-228ENST00000524023 TRIM37O94972 964 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 GH2P01242 217 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 NMT1P30419 496 aaKnown RBP12.09□□□□□ -0.47
HDAC9-228ENST00000524023 MAGEA9P43362 315 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 NFIL3Q16649 462 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 OTOP1Q7RTM1 612 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 SLFN11Q7Z7L1 901 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 SH2D3CQ8N5H7 860 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 EIF1ADQ8N9N8 165 aaKnown RBP12.09□□□□□ -0.47
HDAC9-228ENST00000524023 BCAS4Q8TDM0 211 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 LMBR1Q8WVP7 490 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.09□□□□□ -0.47
HDAC9-228ENST00000524023 CALR3Q96L12 384 aaKnown RBP12.09□□□□□ -0.47
HDAC9-228ENST00000524023 WDR18Q9BV38 432 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 IKZF4Q9H2S9 585 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 TAF1DQ9H5J8 278 aaPredicted RBP12.09□□□□□ -0.47
HDAC9-228ENST00000524023 INTUQ9ULD6 942 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 PRR12Q9ULL5 1215 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 SLX4Q8IY92 1834 aa12.09□□□□□ -0.47
HDAC9-228ENST00000524023 A0A1W2PRG0 241 aa12.08□□□□□ -0.48
HDAC9-228ENST00000524023 A6NNZ2 444 aa12.08□□□□□ -0.48
HDAC9-228ENST00000524023 ANKRD65E5RJM6 399 aa12.08□□□□□ -0.48
HDAC9-228ENST00000524023 SLITRK3O94933 977 aa12.08□□□□□ -0.48
HDAC9-228ENST00000524023 FAM13AO94988 1023 aa12.08□□□□□ -0.48
HDAC9-228ENST00000524023 FERP16591 822 aa12.08□□□□□ -0.48
HDAC9-228ENST00000524023 PSMC2P35998 433 aaKnown RBP12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms