RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 HSP90AA2PQ14568 343 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 KCTD2Q14681 263 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 PPP2R5DQ14738 602 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 TTF1Q15361 905 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZYXQ15942 572 aaKnown RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 CSRP2Q16527 193 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 VMACQ2NL98 169 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 GFOD2Q3B7J2 385 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 WDR72Q3MJ13 1102 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 SV2CQ496J9 727 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 TBC1D10BQ4KMP7 808 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 FNDC3BQ53EP0 1204 aaKnown RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 TM4SF20Q53R12 229 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 INO80DQ53TQ3 878 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 FAM26DQ5JW98 314 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 SYCP2LQ5T4T6 812 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 L1TD1Q5T7N2 865 aaKnown RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ACBD5Q5T8D3 534 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 MEI1Q5TIA1 1274 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 EFCAB2Q5VUJ9 269 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 RNF219Q5W0B1 726 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 STEAP3Q658P3 488 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ICE2Q659A1 982 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 KRT40Q6A162 431 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 NXNQ6DKJ4 435 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 OVOS1Q6IE37 1185 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 KRTAP5-1Q6L8H4 278 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 CCDC70Q6NSX1 233 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 TIGD7Q6NT04 549 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF585AQ6P3V2 769 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 FBXL19Q6PCT2 694 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 TUBA3EQ6PEY2 450 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 SLC4A10Q6U841 1118 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 PI16Q6UXB8 463 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 KSR2Q6VAB6 950 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 BNC2Q6ZN30 1099 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 MICALCLQ6ZW33 695 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 PDZD4Q76G19 769 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 DDX46Q7L014 1031 aaKnown RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 OTOP2Q7RTS6 562 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 NECAB2Q7Z6G3 386 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 C14orf80Q86SX3 495 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 RNF180Q86T96 592 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 DGKHQ86XP1 1220 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF354CQ86Y25 554 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 THNSL2Q86YJ6 484 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 C1orf210Q8IVY1 113 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 DRC7Q8IY82 874 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 NIM1KQ8IY84 436 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 TCEAL8Q8IYN2 117 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 FAM9BQ8IZU0 186 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 SHISA5Q8N114 240 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 CNPY4Q8N129 248 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 AHI1Q8N157 1196 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 LRRC47Q8N1G4 583 aaKnown RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 LCORLQ8N3X6 602 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 CELF2-AS1Q8N7Q2 184 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 PDILTQ8N807 584 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 TEX19Q8NA77 164 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 TXNDC5Q8NBS9 432 aaKnown RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 RBBP8NLQ8NC74 664 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 BVESQ8NE79 360 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 MYRIPQ8NFW9 859 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 TTLL11Q8NHH1 800 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ATL2Q8NHH9 583 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 TTC8Q8TAM2 541 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 CAGE1Q8TC20 777 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 STK35Q8TDR2 534 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF483Q8TF39 744 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 RPGRQ92834 1020 aaKnown RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 HAS1Q92839 578 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 GCDHQ92947 438 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ARL8AQ96BM9 186 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 MFSD3Q96ES6 412 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 SHDQ96IW2 340 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZNF512BQ96KM6 892 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 C20orf173Q96LM9 149 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 JMJD8Q96S16 334 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ADOQ96SZ5 270 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 HAUS7Q99871 368 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ARPC5LQ9BPX5 153 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 HERPUD2Q9BSE4 406 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 SLC12A9Q9BXP2 914 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 LDHAL6BQ9BYZ2 381 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 TRIM8Q9BZR9 551 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 PDGFDQ9GZP0 370 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 PUS7LQ9H0K6 701 aaKnown RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 CDH19Q9H159 772 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 TMX4Q9H1E5 349 aaPredicted RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ADAM7Q9H2U9 754 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ZHX3Q9H4I2 956 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 RIOX1Q9H6W3 641 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 KANSL2Q9H9L4 492 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 BRMS1Q9HCU9 246 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 PRDM11Q9NQV5 511 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ST7Q9NRC1 585 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 ADARB2Q9NS39 739 aaKnown RBP0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 TOMM22Q9NS69 142 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 GINM1Q9NU53 330 aa0.72□□□□□ -2.29
RNU4-54P-201ENST00000516428 INTS7Q9NVH2 962 aaKnown RBP0.72□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms