RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 ZNF654Q8IZM8 581 aa23.26■■□□□ 1.31
SQSTM1-215ENST00000514093 CYP2W1Q8TAV3 490 aa23.26■■□□□ 1.31
SQSTM1-215ENST00000514093 TMEM40Q8WWA1 233 aa23.26■■□□□ 1.31
SQSTM1-215ENST00000514093 CWH43Q9H720 699 aa23.26■■□□□ 1.31
SQSTM1-215ENST00000514093 RGS18Q9NS28 235 aa23.26■■□□□ 1.31
SQSTM1-215ENST00000514093 PLXNA3P51805 1871 aa23.26■■□□□ 1.31
SQSTM1-215ENST00000514093 FNDC1Q4ZHG4 1894 aaPredicted RBP23.26■■□□□ 1.31
SQSTM1-215ENST00000514093 SPDYE3A6NKU9 549 aa23.25■■□□□ 1.31
SQSTM1-215ENST00000514093 HIDE1A8MVS5 230 aa23.25■■□□□ 1.31
SQSTM1-215ENST00000514093 RPS6KA5O75582 802 aa23.25■■□□□ 1.31
SQSTM1-215ENST00000514093 FGFR1P11362 822 aa23.25■■□□□ 1.31
SQSTM1-215ENST00000514093 TMEM184AQ6ZMB5 413 aa23.25■■□□□ 1.31
SQSTM1-215ENST00000514093 NME8Q8N427 588 aa23.25■■□□□ 1.31
SQSTM1-215ENST00000514093 KREMEN2Q8NCW0 462 aa23.25■■□□□ 1.31
SQSTM1-215ENST00000514093 TNPO1Q92973 898 aaKnown RBP23.25■■□□□ 1.31
SQSTM1-215ENST00000514093 PPP1R16BQ96T49 567 aa23.25■■□□□ 1.31
SQSTM1-215ENST00000514093 KCNH7Q9NS40 1196 aa23.25■■□□□ 1.31
SQSTM1-215ENST00000514093 C9IYK1 514 aa23.24■■□□□ 1.31
SQSTM1-215ENST00000514093 MAFGO15525 162 aa23.24■■□□□ 1.31
SQSTM1-215ENST00000514093 GALR2O43603 387 aaPredicted RBP23.24■■□□□ 1.31
SQSTM1-215ENST00000514093 SRGAP2BP0DMP2 458 aa23.24■■□□□ 1.31
SQSTM1-215ENST00000514093 RXRAP19793 462 aa23.24■■□□□ 1.31
SQSTM1-215ENST00000514093 KLRC1P26715 233 aa23.24■■□□□ 1.31
SQSTM1-215ENST00000514093 KIF5BP33176 963 aa23.24■■□□□ 1.31
SQSTM1-215ENST00000514093 PDE12Q6L8Q7 609 aaKnown RBP23.24■■□□□ 1.31
SQSTM1-215ENST00000514093 PLPPR4Q7Z2D5 763 aa23.24■■□□□ 1.31
SQSTM1-215ENST00000514093 TCF25Q9BQ70 676 aa23.24■■□□□ 1.31
SQSTM1-215ENST00000514093 SMOC2Q9H3U7 446 aa23.24■■□□□ 1.31
SQSTM1-215ENST00000514093 LY9Q9HBG7 655 aa23.24■■□□□ 1.31
SQSTM1-215ENST00000514093 ENTPD7Q9NQZ7 604 aa23.24■■□□□ 1.31
SQSTM1-215ENST00000514093 ST3GAL5Q9UNP4 418 aa23.24■■□□□ 1.31
SQSTM1-215ENST00000514093 FSD2A1L4K1 749 aa23.23■■□□□ 1.31
SQSTM1-215ENST00000514093 ARP10275 920 aa23.23■■□□□ 1.31
SQSTM1-215ENST00000514093 SMARCA1P28370 1054 aa23.23■■□□□ 1.31
SQSTM1-215ENST00000514093 SLC24A5Q71RS6 500 aa23.23■■□□□ 1.31
SQSTM1-215ENST00000514093 MB21D2Q8IYB1 491 aaPredicted RBP23.23■■□□□ 1.31
SQSTM1-215ENST00000514093 CCDC82Q8N4S0 544 aa23.23■■□□□ 1.31
SQSTM1-215ENST00000514093 MRPS27Q92552 414 aaKnown RBP23.23■■□□□ 1.31
SQSTM1-215ENST00000514093 MAP3K14Q99558 947 aa23.23■■□□□ 1.31
SQSTM1-215ENST00000514093 MXRA8Q9BRK3 442 aa23.23■■□□□ 1.31
SQSTM1-215ENST00000514093 SDF4Q9BRK5 362 aa23.23■■□□□ 1.31
SQSTM1-215ENST00000514093 C1orf112Q9NSG2 853 aa23.23■■□□□ 1.31
SQSTM1-215ENST00000514093 DMDP11532 3685 aa23.22■■□□□ 1.31
SQSTM1-215ENST00000514093 DDAH1O94760 285 aa23.22■■□□□ 1.31
SQSTM1-215ENST00000514093 BRD1O95696 1058 aa23.22■■□□□ 1.31
SQSTM1-215ENST00000514093 PBX3P40426 434 aa23.22■■□□□ 1.31
SQSTM1-215ENST00000514093 RAB11FIP4Q86YS3 637 aa23.22■■□□□ 1.31
SQSTM1-215ENST00000514093 KIAA0319LQ8IZA0 1049 aa23.22■■□□□ 1.31
SQSTM1-215ENST00000514093 TMEM105Q8N8V8 129 aa23.22■■□□□ 1.31
SQSTM1-215ENST00000514093 LZTS2Q9BRK4 669 aa23.22■■□□□ 1.31
SQSTM1-215ENST00000514093 ATP6V0A4Q9HBG4 840 aa23.22■■□□□ 1.31
SQSTM1-215ENST00000514093 PTPRZ1P23471 2315 aaPredicted RBP23.21■■□□□ 1.31
SQSTM1-215ENST00000514093 PROB1E7EW31 1015 aa23.21■■□□□ 1.31
SQSTM1-215ENST00000514093 LAG3P18627 525 aa23.21■■□□□ 1.31
SQSTM1-215ENST00000514093 PDE4AP27815 886 aa23.21■■□□□ 1.31
SQSTM1-215ENST00000514093 ITGB3BPQ13352 177 aaPredicted RBP23.21■■□□□ 1.31
SQSTM1-215ENST00000514093 LRRC55Q6ZSA7 311 aa23.21■■□□□ 1.31
SQSTM1-215ENST00000514093 RASGRP4Q8TDF6 673 aa23.21■■□□□ 1.31
SQSTM1-215ENST00000514093 PGBD1Q96JS3 809 aa23.21■■□□□ 1.31
SQSTM1-215ENST00000514093 PUF60Q9UHX1 559 aaKnown RBP23.21■■□□□ 1.31
SQSTM1-215ENST00000514093 C2CD4DB7Z1M9 353 aa23.2■■□□□ 1.3
SQSTM1-215ENST00000514093 DDX39AO00148 427 aaKnown RBP23.2■■□□□ 1.3
SQSTM1-215ENST00000514093 GSPT1P15170 499 aaKnown RBP23.2■■□□□ 1.3
SQSTM1-215ENST00000514093 NUBP1P53384 320 aa23.2■■□□□ 1.3
SQSTM1-215ENST00000514093 PLCB3Q01970 1234 aa23.2■■□□□ 1.3
SQSTM1-215ENST00000514093 NFXL1Q6ZNB6 911 aa23.2■■□□□ 1.3
SQSTM1-215ENST00000514093 OSMRQ99650 979 aa23.2■■□□□ 1.3
SQSTM1-215ENST00000514093 POMKQ9H5K3 350 aa23.2■■□□□ 1.3
SQSTM1-215ENST00000514093 TMEM161AQ9NX61 479 aa23.2■■□□□ 1.3
SQSTM1-215ENST00000514093 LZTS1Q9Y250 596 aa23.2■■□□□ 1.3
SQSTM1-215ENST00000514093 NR2E1Q9Y466 385 aa23.2■■□□□ 1.3
SQSTM1-215ENST00000514093 SPTBN4Q9H254 2564 aa23.2■■□□□ 1.3
SQSTM1-215ENST00000514093 NFASCO94856 1347 aa23.19■■□□□ 1.3
SQSTM1-215ENST00000514093 PRR23AA6NEV1 266 aa23.19■■□□□ 1.3
SQSTM1-215ENST00000514093 GPR182O15218 404 aa23.19■■□□□ 1.3
SQSTM1-215ENST00000514093 WEE2P0C1S8 567 aa23.19■■□□□ 1.3
SQSTM1-215ENST00000514093 HOXB8P17481 243 aaPredicted RBP23.19■■□□□ 1.3
SQSTM1-215ENST00000514093 GNAQP50148 359 aa23.19■■□□□ 1.3
SQSTM1-215ENST00000514093 FAM189BP81408 668 aa23.19■■□□□ 1.3
SQSTM1-215ENST00000514093 FOXK2Q01167 660 aa23.19■■□□□ 1.3
SQSTM1-215ENST00000514093 MTMR3Q13615 1198 aa23.19■■□□□ 1.3
SQSTM1-215ENST00000514093 KIZQ2M2Z5 673 aa23.19■■□□□ 1.3
SQSTM1-215ENST00000514093 KCNT2Q6UVM3 1135 aa23.19■■□□□ 1.3
SQSTM1-215ENST00000514093 TMC7Q7Z402 723 aa23.19■■□□□ 1.3
SQSTM1-215ENST00000514093 HEATR3Q7Z4Q2 680 aa23.19■■□□□ 1.3
SQSTM1-215ENST00000514093 FAM228AQ86W67 206 aa23.19■■□□□ 1.3
SQSTM1-215ENST00000514093 RNF216Q9NWF9 866 aaPredicted RBP23.19■■□□□ 1.3
SQSTM1-215ENST00000514093 SORCS3Q9UPU3 1222 aa23.19■■□□□ 1.3
SQSTM1-215ENST00000514093 BACH1O14867 736 aa23.18■■□□□ 1.3
SQSTM1-215ENST00000514093 ATG7O95352 703 aa23.18■■□□□ 1.3
SQSTM1-215ENST00000514093 ASGR2P07307 311 aa23.18■■□□□ 1.3
SQSTM1-215ENST00000514093 UBALD2Q8IYN6 164 aa23.18■■□□□ 1.3
SQSTM1-215ENST00000514093 CASD1Q96PB1 797 aa23.18■■□□□ 1.3
SQSTM1-215ENST00000514093 AGO4Q9HCK5 861 aaKnown RBP23.18■■□□□ 1.3
SQSTM1-215ENST00000514093 NGRNQ9NPE2 291 aaKnown RBP23.18■■□□□ 1.3
SQSTM1-215ENST00000514093 MYO10Q9HD67 2058 aa23.17■■□□□ 1.3
SQSTM1-215ENST00000514093 PRC1O43663 620 aa23.17■■□□□ 1.3
SQSTM1-215ENST00000514093 HBP1O60381 514 aa23.17■■□□□ 1.3
SQSTM1-215ENST00000514093 CCNE2O96020 404 aa23.17■■□□□ 1.3
SQSTM1-215ENST00000514093 NBL1P41271 181 aa23.17■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms