RNA–Protein interactions for RNA: ENST00000512228.5

LIMCH1-214, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 4

Gene LIMCH1, Length 473 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-214ENST00000512228 GPR32O75388 356 aa12.68□□□□□ -0.38
LIMCH1-214ENST00000512228 REC8O95072 547 aa12.68□□□□□ -0.38
LIMCH1-214ENST00000512228 CSPG5O95196 566 aa12.68□□□□□ -0.38
LIMCH1-214ENST00000512228 STBD1O95210 358 aa12.68□□□□□ -0.38
LIMCH1-214ENST00000512228 C22orf31O95567 290 aa12.68□□□□□ -0.38
LIMCH1-214ENST00000512228 VTNP04004 478 aa12.68□□□□□ -0.38
LIMCH1-214ENST00000512228 NFX1Q12986 1120 aaKnown RBP12.68□□□□□ -0.38
LIMCH1-214ENST00000512228 STK3Q13188 491 aa12.68□□□□□ -0.38
LIMCH1-214ENST00000512228 AAK1Q2M2I8 961 aa12.68□□□□□ -0.38
LIMCH1-214ENST00000512228 MIS18BP1Q6P0N0 1132 aa12.68□□□□□ -0.38
LIMCH1-214ENST00000512228 BANK1Q8NDB2 785 aa12.68□□□□□ -0.38
LIMCH1-214ENST00000512228 CLP1Q92989 425 aaKnown RBP12.68□□□□□ -0.38
LIMCH1-214ENST00000512228 ZNF668Q96K58 619 aaPredicted RBP12.68□□□□□ -0.38
LIMCH1-214ENST00000512228 GLT8D2Q9H1C3 349 aa12.68□□□□□ -0.38
LIMCH1-214ENST00000512228 GABBR1Q9UBS5 961 aa12.68□□□□□ -0.38
LIMCH1-214ENST00000512228 SQORQ9Y6N5 450 aa12.68□□□□□ -0.38
LIMCH1-214ENST00000512228 ADGRA3Q8IWK6 1321 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 TMEM150BA6NC51 233 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 LINC01565O15544 149 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 TDP2O95551 362 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 COL9A1P20849 921 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 IBSPP21815 317 aaPredicted RBP12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 PSMA5P28066 241 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 GNA11P29992 359 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 CTNNB1P35222 781 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 SLC26A2P50443 739 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 DRP2Q13474 957 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 BTG3Q14201 252 aaPredicted RBP12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 COL19A1Q14993 1142 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 KIZQ2M2Z5 673 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 LEXMQ3ZCV2 418 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 PAN2Q504Q3 1202 aaKnown RBP12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 ZNF484Q5JVG2 852 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 FAM102BQ5T8I3 360 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 ZNF746Q6NUN9 644 aaPredicted RBP12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 NME8Q8N427 588 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 LINC01465Q8N7H1 131 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 NEK9Q8TD19 979 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 SLC5A5Q92911 643 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 SH2D3AQ9BRG2 576 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 UNC45AQ9H3U1 944 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 C11orf16Q9NQ32 467 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 TBC1D22BQ9NU19 505 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 ST3GAL5Q9UNP4 418 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 KCNJ14Q9UNX9 436 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 PLAGL2Q9UPG8 496 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 PCDHGC5Q9Y5F6 944 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 PCDHA10Q9Y5I2 948 aa12.67□□□□□ -0.38
LIMCH1-214ENST00000512228 CTDNEP1O95476 244 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 ITGB1P05556 798 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 IRS1P35568 1242 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 USP11P51784 963 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 CLCN3P51790 818 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 NLRP5P59047 1200 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 SCRN1Q12765 414 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 HYAL1Q12794 435 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 FAM160B1Q5W0V3 765 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 B3GNT9Q6UX72 402 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 FAM228AQ86W67 206 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 FAM178BQ8IXR5 827 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 LRRC71Q8N4P6 559 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 IL27Q8NEV9 243 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 SPPL3Q8TCT6 385 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 TBCKQ8TEA7 893 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 BBXQ8WY36 941 aaPredicted RBP12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 ZNF274Q96GC6 653 aaPredicted RBP12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 SAMD11Q96NU1 681 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 CEP89Q96ST8 783 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 OSMRQ99650 979 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 ADAM2Q99965 735 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 ADAMTS10Q9H324 1103 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 TPCN1Q9ULQ1 816 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 PCDHA4Q9UN74 947 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 CYP46A1Q9Y6A2 500 aa12.66□□□□□ -0.38
LIMCH1-214ENST00000512228 GRXCR2A6NFK2 248 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 C9IYK1 514 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 CHMP2AO43633 222 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 CSDE1O75534 798 aaKnown RBP12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 PSMD10O75832 226 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 PSAPP07602 524 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 FAM189BP81408 668 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 AKAP17AQ02040 695 aaKnown RBP12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 SSRP1Q08945 709 aaKnown RBP12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 PAK2Q13177 524 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 DSC3Q14574 896 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 CTC1Q2NKJ3 1217 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 EARS2Q5JPH6 523 aaKnown RBP12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 EFCAB12Q6NXP0 572 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 LRRC55Q6ZSA7 311 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 ADGRD2Q7Z7M1 963 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 NPAS4Q8IUM7 802 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 CKAP2LQ8IYA6 745 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 METTL13Q8N6R0 699 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 KLHL23Q8NBE8 558 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 OXER1Q8TDS5 423 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 TM6SF1Q9BZW5 370 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 SH3GLB2Q9NR46 395 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 DISC1Q9NRI5 854 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 RGS18Q9NS28 235 aa12.65□□□□□ -0.38
LIMCH1-214ENST00000512228 PDRG1Q9NUG6 133 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms