RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 ECE1P42892 770 aa4.67□□□□□ -1.66
NUP54-208ENST00000508604 STILQ15468 1287 aa4.67□□□□□ -1.66
NUP54-208ENST00000508604 ZNF662Q6ZS27 426 aa4.67□□□□□ -1.66
NUP54-208ENST00000508604 PTRH1Q86Y79 214 aaKnown RBP4.67□□□□□ -1.66
NUP54-208ENST00000508604 TMPRSS6Q8IU80 811 aa4.67□□□□□ -1.66
NUP54-208ENST00000508604 CELF2-AS1Q8N7Q2 184 aa4.67□□□□□ -1.66
NUP54-208ENST00000508604 CFHR4Q92496 578 aa4.67□□□□□ -1.66
NUP54-208ENST00000508604 TMEM176AQ96HP8 235 aa4.67□□□□□ -1.66
NUP54-208ENST00000508604 MPHOSPH9Q99550 1183 aa4.67□□□□□ -1.66
NUP54-208ENST00000508604 CDC6Q99741 560 aa4.67□□□□□ -1.66
NUP54-208ENST00000508604 TRAF6Q9Y4K3 522 aa4.67□□□□□ -1.66
NUP54-208ENST00000508604 PMS2P1A4D2B8 440 aa4.66□□□□□ -1.66
NUP54-208ENST00000508604 TMEM191CA6NGB0 347 aa4.66□□□□□ -1.66
NUP54-208ENST00000508604 SLC26A4O43511 780 aa4.66□□□□□ -1.66
NUP54-208ENST00000508604 PEX11BO96011 259 aa4.66□□□□□ -1.66
NUP54-208ENST00000508604 FNDC7Q5VTL7 733 aa4.66□□□□□ -1.66
NUP54-208ENST00000508604 TRIM68Q6AZZ1 485 aa4.66□□□□□ -1.66
NUP54-208ENST00000508604 GRAMD4Q6IC98 578 aa4.66□□□□□ -1.66
NUP54-208ENST00000508604 C16orf59Q7L2K0 433 aa4.66□□□□□ -1.66
NUP54-208ENST00000508604 OSTM1Q86WC4 334 aa4.66□□□□□ -1.66
NUP54-208ENST00000508604 ANKRD35Q8N283 1001 aa4.66□□□□□ -1.66
NUP54-208ENST00000508604 OR10A5Q9H207 317 aa4.66□□□□□ -1.66
NUP54-208ENST00000508604 ASXL2Q76L83 1435 aa4.65□□□□□ -1.66
NUP54-208ENST00000508604 MAN2B1O00754 1011 aa4.65□□□□□ -1.66
NUP54-208ENST00000508604 CLASP2O75122 1294 aaKnown RBP4.65□□□□□ -1.66
NUP54-208ENST00000508604 PYGMP11217 842 aa4.65□□□□□ -1.66
NUP54-208ENST00000508604 CD83Q01151 205 aa4.65□□□□□ -1.66
NUP54-208ENST00000508604 GUCY1A3Q02108 690 aa4.65□□□□□ -1.66
NUP54-208ENST00000508604 MAP3K12Q12852 859 aa4.65□□□□□ -1.66
NUP54-208ENST00000508604 MOGSQ13724 837 aa4.65□□□□□ -1.66
NUP54-208ENST00000508604 TMEM200BQ69YZ2 307 aa4.65□□□□□ -1.66
NUP54-208ENST00000508604 SCUBE1Q8IWY4 988 aa4.65□□□□□ -1.66
NUP54-208ENST00000508604 GPR135Q8IZ08 494 aa4.65□□□□□ -1.66
NUP54-208ENST00000508604 PTPRN2Q92932 1015 aa4.65□□□□□ -1.66
NUP54-208ENST00000508604 UCKL1Q9NWZ5 548 aa4.65□□□□□ -1.66
NUP54-208ENST00000508604 DMRT1Q9Y5R6 373 aa4.65□□□□□ -1.66
NUP54-208ENST00000508604 KRTAP23-1A1A580 65 aa4.64□□□□□ -1.67
NUP54-208ENST00000508604 WNT9AO14904 365 aa4.64□□□□□ -1.67
NUP54-208ENST00000508604 C4BPAP04003 597 aaKnown RBP4.64□□□□□ -1.67
NUP54-208ENST00000508604 MC4RP32245 332 aa4.64□□□□□ -1.67
NUP54-208ENST00000508604 YOD1Q5VVQ6 348 aaPredicted RBP4.64□□□□□ -1.67
NUP54-208ENST00000508604 DPY19L2P1Q6NXN4 242 aa4.64□□□□□ -1.67
NUP54-208ENST00000508604 CALML6Q8TD86 181 aa4.64□□□□□ -1.67
NUP54-208ENST00000508604 LPPQ93052 612 aa4.64□□□□□ -1.67
NUP54-208ENST00000508604 ZNF669Q96BR6 464 aaPredicted RBP4.64□□□□□ -1.67
NUP54-208ENST00000508604 SLC2A4RGQ9NR83 387 aa4.64□□□□□ -1.67
NUP54-208ENST00000508604 CEP72Q9P209 647 aa4.64□□□□□ -1.67
NUP54-208ENST00000508604 PCDHA8Q9Y5H6 950 aa4.64□□□□□ -1.67
NUP54-208ENST00000508604 A0A1W2PRX2 142 aa4.64□□□□□ -1.67
NUP54-208ENST00000508604 AMY2AP04746 511 aa4.64□□□□□ -1.67
NUP54-208ENST00000508604 SRGAP2CP0DJJ0 459 aa4.64□□□□□ -1.67
NUP54-208ENST00000508604 AMY2BP19961 511 aa4.64□□□□□ -1.67
NUP54-208ENST00000508604 CNGB1Q14028 1251 aaPredicted RBP4.64□□□□□ -1.67
NUP54-208ENST00000508604 RRP1BQ14684 758 aaKnown RBP4.64□□□□□ -1.67
NUP54-208ENST00000508604 KRTAP15-1Q3LI76 137 aa4.64□□□□□ -1.67
NUP54-208ENST00000508604 MCF2L2Q86YR7 1114 aa4.64□□□□□ -1.67
NUP54-208ENST00000508604 ZC3H7AQ8IWR0 971 aaKnown RBP4.64□□□□□ -1.67
NUP54-208ENST00000508604 ULK2Q8IYT8 1036 aa4.64□□□□□ -1.67
NUP54-208ENST00000508604 HIPK4Q8NE63 616 aa4.64□□□□□ -1.67
NUP54-208ENST00000508604 TTPALQ9BTX7 342 aa4.64□□□□□ -1.67
NUP54-208ENST00000508604 SPATA9Q9BWV2 254 aa4.64□□□□□ -1.67
NUP54-208ENST00000508604 TRIM55Q9BYV6 548 aa4.64□□□□□ -1.67
NUP54-208ENST00000508604 BTBD7Q9P203 1132 aa4.64□□□□□ -1.67
NUP54-208ENST00000508604 DNM2P50570 870 aa4.63□□□□□ -1.67
NUP54-208ENST00000508604 JAM2P57087 298 aa4.63□□□□□ -1.67
NUP54-208ENST00000508604 SESN2P58004 480 aaPredicted RBP4.63□□□□□ -1.67
NUP54-208ENST00000508604 SUMO1P63165 101 aaKnown RBP4.63□□□□□ -1.67
NUP54-208ENST00000508604 RIN1Q13671 783 aa4.63□□□□□ -1.67
NUP54-208ENST00000508604 GSPT2Q8IYD1 628 aaKnown RBP4.63□□□□□ -1.67
NUP54-208ENST00000508604 PCDH19Q8TAB3 1148 aa4.63□□□□□ -1.67
NUP54-208ENST00000508604 VWA7Q9Y334 891 aa4.63□□□□□ -1.67
NUP54-208ENST00000508604 CCDC66A2RUB6 948 aa4.62□□□□□ -1.67
NUP54-208ENST00000508604 UNCXA6NJT0 531 aa4.62□□□□□ -1.67
NUP54-208ENST00000508604 PTGS2P35354 604 aa4.62□□□□□ -1.67
NUP54-208ENST00000508604 STAT5BP51692 787 aa4.62□□□□□ -1.67
NUP54-208ENST00000508604 HGFACQ04756 655 aa4.62□□□□□ -1.67
NUP54-208ENST00000508604 KANK2Q63ZY3 851 aa4.62□□□□□ -1.67
NUP54-208ENST00000508604 ZNF627Q7L945 461 aa4.62□□□□□ -1.67
NUP54-208ENST00000508604 RABGGTAQ92696 567 aa4.62□□□□□ -1.67
NUP54-208ENST00000508604 MIEF2Q96C03 454 aa4.62□□□□□ -1.67
NUP54-208ENST00000508604 AGAP2Q99490 1192 aa4.62□□□□□ -1.67
NUP54-208ENST00000508604 AMNQ9BXJ7 453 aa4.62□□□□□ -1.67
NUP54-208ENST00000508604 CBLCQ9ULV8 474 aa4.62□□□□□ -1.67
NUP54-208ENST00000508604 TRBV23-1A0A0A0MS06 115 aa4.61□□□□□ -1.67
NUP54-208ENST00000508604 ZNF561-AS1K7EIQ3 104 aa4.61□□□□□ -1.67
NUP54-208ENST00000508604 ARVCFO00192 962 aa4.61□□□□□ -1.67
NUP54-208ENST00000508604 H2AFYO75367 372 aaKnown RBP4.61□□□□□ -1.67
NUP54-208ENST00000508604 GABREP78334 506 aa4.61□□□□□ -1.67
NUP54-208ENST00000508604 LAIR1Q6GTX8 287 aa4.61□□□□□ -1.67
NUP54-208ENST00000508604 LRSAM1Q6UWE0 723 aa4.61□□□□□ -1.67
NUP54-208ENST00000508604 ASB1Q9Y576 335 aa4.61□□□□□ -1.67
NUP54-208ENST00000508604 PRAMEF22A3QJZ6 481 aa4.61□□□□□ -1.67
NUP54-208ENST00000508604 SCDO00767 359 aa4.61□□□□□ -1.67
NUP54-208ENST00000508604 KCNK3O14649 394 aa4.61□□□□□ -1.67
NUP54-208ENST00000508604 KLF4O43474 513 aa4.61□□□□□ -1.67
NUP54-208ENST00000508604 MMEP08473 750 aa4.61□□□□□ -1.67
NUP54-208ENST00000508604 APEX1P27695 318 aaKnown RBP4.61□□□□□ -1.67
NUP54-208ENST00000508604 ZC3H6P61129 1189 aaKnown RBP4.61□□□□□ -1.67
NUP54-208ENST00000508604 LACTBP83111 547 aaPredicted RBP4.61□□□□□ -1.67
NUP54-208ENST00000508604 FSTL1Q12841 308 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms