RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 DDX21Q9NR30 783 aaKnown RBP eCLIP5.84□□□□□ -1.47
NUP54-206ENST00000508465 ZNF652Q9Y2D9 606 aa5.84□□□□□ -1.47
NUP54-206ENST00000508465 DUSP10Q9Y6W6 482 aa5.84□□□□□ -1.47
NUP54-206ENST00000508465 N4BP2Q86UW6 1770 aaPredicted RBP5.84□□□□□ -1.47
NUP54-206ENST00000508465 C4AP0C0L4 1744 aa5.84□□□□□ -1.47
NUP54-206ENST00000508465 H0Y8X5 98 aa5.83□□□□□ -1.48
NUP54-206ENST00000508465 SUV39H1O43463 412 aa5.83□□□□□ -1.48
NUP54-206ENST00000508465 TNFRSF1AP19438 455 aa5.83□□□□□ -1.48
NUP54-206ENST00000508465 TACR1P25103 407 aa5.83□□□□□ -1.48
NUP54-206ENST00000508465 ST5P78524 1137 aa5.83□□□□□ -1.48
NUP54-206ENST00000508465 ANKRD39Q53RE8 183 aa5.83□□□□□ -1.48
NUP54-206ENST00000508465 C9orf131Q5VYM1 1079 aa5.83□□□□□ -1.48
NUP54-206ENST00000508465 FBXO33Q7Z6M2 555 aa5.83□□□□□ -1.48
NUP54-206ENST00000508465 ZNF34Q8IZ26 560 aa5.83□□□□□ -1.48
NUP54-206ENST00000508465 NKD1Q969G9 470 aa5.83□□□□□ -1.48
NUP54-206ENST00000508465 TRAIPQ9BWF2 469 aa5.83□□□□□ -1.48
NUP54-206ENST00000508465 PHAXQ9H814 394 aaKnown RBP5.83□□□□□ -1.48
NUP54-206ENST00000508465 IFT57Q9NWB7 429 aa5.83□□□□□ -1.48
NUP54-206ENST00000508465 UBP1Q9NZI7 540 aa5.83□□□□□ -1.48
NUP54-206ENST00000508465 NTMQ9P121 344 aa5.83□□□□□ -1.48
NUP54-206ENST00000508465 SF3B6Q9Y3B4 125 aaKnown RBP5.83□□□□□ -1.48
NUP54-206ENST00000508465 UBN2Q6ZU65 1347 aa5.82□□□□□ -1.48
NUP54-206ENST00000508465 SRGNP10124 158 aa5.82□□□□□ -1.48
NUP54-206ENST00000508465 MC3RP41968 323 aa5.82□□□□□ -1.48
NUP54-206ENST00000508465 PRELPP51888 382 aa5.82□□□□□ -1.48
NUP54-206ENST00000508465 POU4F1Q01851 419 aa5.82□□□□□ -1.48
NUP54-206ENST00000508465 CALD1Q05682 793 aaKnown RBP5.82□□□□□ -1.48
NUP54-206ENST00000508465 DLX2Q07687 328 aaPredicted RBP5.82□□□□□ -1.48
NUP54-206ENST00000508465 LOXL4Q96JB6 756 aa5.82□□□□□ -1.48
NUP54-206ENST00000508465 PTCHD1Q96NR3 888 aa5.82□□□□□ -1.48
NUP54-206ENST00000508465 SAMD11Q96NU1 681 aa5.82□□□□□ -1.48
NUP54-206ENST00000508465 NUDT5Q9UKK9 219 aa5.82□□□□□ -1.48
NUP54-206ENST00000508465 PLA2G2DQ9UNK4 145 aa5.82□□□□□ -1.48
NUP54-206ENST00000508465 AFDNP55196 1824 aaKnown RBP5.81□□□□□ -1.48
NUP54-206ENST00000508465 KDM3BQ7LBC6 1761 aa5.81□□□□□ -1.48
NUP54-206ENST00000508465 C9IYK1 514 aa5.81□□□□□ -1.48
NUP54-206ENST00000508465 FSHBP01225 129 aa5.81□□□□□ -1.48
NUP54-206ENST00000508465 PMS1P54277 932 aaKnown RBP5.81□□□□□ -1.48
NUP54-206ENST00000508465 TCIRG1Q13488 830 aa5.81□□□□□ -1.48
NUP54-206ENST00000508465 SLC9A5Q14940 896 aa5.81□□□□□ -1.48
NUP54-206ENST00000508465 STYK1Q6J9G0 422 aa5.81□□□□□ -1.48
NUP54-206ENST00000508465 G2E3Q7L622 706 aa5.81□□□□□ -1.48
NUP54-206ENST00000508465 HS2ST1Q7LGA3 356 aa5.81□□□□□ -1.48
NUP54-206ENST00000508465 NLRP10Q86W26 655 aa5.81□□□□□ -1.48
NUP54-206ENST00000508465 TTC9BQ8N6N2 239 aa5.81□□□□□ -1.48
NUP54-206ENST00000508465 BRF1Q92994 677 aa5.81□□□□□ -1.48
NUP54-206ENST00000508465 TSPAN17Q96FV3 270 aa5.81□□□□□ -1.48
NUP54-206ENST00000508465 FAM89AQ96GI7 184 aa5.81□□□□□ -1.48
NUP54-206ENST00000508465 MASTLQ96GX5 879 aa5.81□□□□□ -1.48
NUP54-206ENST00000508465 FCRL3Q96P31 734 aaPredicted RBP5.81□□□□□ -1.48
NUP54-206ENST00000508465 RBM15Q96T37 977 aaKnown RBP eCLIP5.81□□□□□ -1.48
NUP54-206ENST00000508465 UTP14AQ9BVJ6 771 aaKnown RBP5.81□□□□□ -1.48
NUP54-206ENST00000508465 NYXQ9GZU5 481 aa5.81□□□□□ -1.48
NUP54-206ENST00000508465 HYPKQ9NX55 129 aa5.81□□□□□ -1.48
NUP54-206ENST00000508465 RNF181Q9P0P0 153 aa5.81□□□□□ -1.48
NUP54-206ENST00000508465 DBF4Q9UBU7 674 aaPredicted RBP5.81□□□□□ -1.48
NUP54-206ENST00000508465 GGT7Q9UJ14 662 aa5.81□□□□□ -1.48
NUP54-206ENST00000508465 CEP350Q5VT06 3117 aa5.81□□□□□ -1.48
NUP54-206ENST00000508465 KLRG2A4D1S0 409 aaPredicted RBP5.8□□□□□ -1.48
NUP54-206ENST00000508465 FAM86C2PA6NEL3 165 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 C1QTNF3-AMACRE9PGA6 284 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 MATN3O15232 486 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 SHOXO15266 292 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 SMARCA5O60264 1052 aaPredicted RBP5.8□□□□□ -1.48
NUP54-206ENST00000508465 NTSR2O95665 410 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 GLI4P10075 376 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 NPR1P16066 1061 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 PMLP29590 882 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 ZNF445P59923 1031 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 EXOSC9Q06265 439 aaKnown RBP5.8□□□□□ -1.48
NUP54-206ENST00000508465 KIAA2012Q0VF49 1180 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 CCDC27Q2M243 656 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 CCDC30Q5VVM6 783 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 DNAJC14Q6Y2X3 702 aaPredicted RBP5.8□□□□□ -1.48
NUP54-206ENST00000508465 PPP1R42Q7Z4L9 355 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 ZNF761Q86XN6 746 aaPredicted RBP5.8□□□□□ -1.48
NUP54-206ENST00000508465 SLITRK4Q8IW52 837 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 WDR63Q8IWG1 891 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 FIBCD1Q8N539 461 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 SLC16A11Q8NCK7 471 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 CHST13Q8NET6 341 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 PLBD2Q8NHP8 589 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 SMARCC2Q8TAQ2 1214 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 CPA5Q8WXQ8 436 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 PEX11GQ96HA9 241 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 NT5C1AQ9BXI3 368 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 C1QTNF3Q9BXJ4 246 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 GP6Q9HCN6 339 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 ADAMTS1Q9UHI8 967 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 TRMT112Q9UI30 125 aaKnown RBP5.8□□□□□ -1.48
NUP54-206ENST00000508465 FHOD1Q9Y613 1164 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 ATP10DQ9P241 1426 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 ABCC12Q96J65 1359 aa5.8□□□□□ -1.48
NUP54-206ENST00000508465 KIAA1551Q9HCM1 1747 aa5.79□□□□□ -1.48
NUP54-206ENST00000508465 KIF13BQ9NQT8 1826 aa5.79□□□□□ -1.48
NUP54-206ENST00000508465 VAMP4O75379 141 aa5.79□□□□□ -1.48
NUP54-206ENST00000508465 CD3EP07766 207 aa5.79□□□□□ -1.48
NUP54-206ENST00000508465 HOXB7P09629 217 aa5.79□□□□□ -1.48
NUP54-206ENST00000508465 IMPDH2P12268 514 aa5.79□□□□□ -1.48
NUP54-206ENST00000508465 ITGA4P13612 1032 aa5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms