RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 ASTN1O14525 1302 aa13.14□□□□□ -0.31
NUP54-202ENST00000502850 SASH3O75995 380 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 MYBP10242 640 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 HSD17B4P51659 736 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 VSNL1P62760 191 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 GHRHRQ02643 423 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 MYBPC2Q14324 1141 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 CCDC181Q5TID7 509 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 LDHDQ86WU2 507 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 DNAJC5GQ8N7S2 189 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 NOA1Q8NC60 698 aaKnown RBP13.13□□□□□ -0.31
NUP54-202ENST00000502850 DYDC2Q96IM9 177 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 SPAG5Q96R06 1193 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 MMS19Q96T76 1030 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 L1RE1Q9UN81 338 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 PCDHB13Q9Y5F0 798 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 MYH11P35749 1972 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 EML1O00423 815 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 GFPT2O94808 682 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 PRPF6O94906 941 aaKnown RBP13.13□□□□□ -0.31
NUP54-202ENST00000502850 SLITRK3O94933 977 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 FDX1P10109 184 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 GUCY2CP25092 1073 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 OAS2P29728 719 aaKnown RBP13.13□□□□□ -0.31
NUP54-202ENST00000502850 PSMC2P35998 433 aaKnown RBP13.13□□□□□ -0.31
NUP54-202ENST00000502850 CASP5P51878 434 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 ZNF131P52739 623 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 GFPT1Q06210 699 aaPredicted RBP13.13□□□□□ -0.31
NUP54-202ENST00000502850 HSP90B2PQ58FF3 399 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 C1orf186Q6ZWK4 172 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 TPH2Q8IWU9 490 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 MMGT1Q8N4V1 131 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 MYCT1Q8N699 235 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 CYP2W1Q8TAV3 490 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 ZBED3Q96IU2 234 aaPredicted RBP13.13□□□□□ -0.31
NUP54-202ENST00000502850 CAPZA3Q96KX2 299 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 UIMC1Q96RL1 719 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 MXRA8Q9BRK3 442 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 ZMYND15Q9H091 742 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 ABCB6Q9NP58 842 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 CCPG1Q9ULG6 757 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 CAPN6Q9Y6Q1 641 aa13.13□□□□□ -0.31
NUP54-202ENST00000502850 RPTORQ8N122 1335 aa13.12□□□□□ -0.31
NUP54-202ENST00000502850 ARHGEF35A5YM69 484 aa13.12□□□□□ -0.31
NUP54-202ENST00000502850 FLOT1O75955 427 aa13.12□□□□□ -0.31
NUP54-202ENST00000502850 MOCS3O95396 460 aa13.12□□□□□ -0.31
NUP54-202ENST00000502850 MAPTP10636 758 aaKnown RBP13.12□□□□□ -0.31
NUP54-202ENST00000502850 RFX1P22670 979 aa13.12□□□□□ -0.31
NUP54-202ENST00000502850 PRKCIP41743 596 aa13.12□□□□□ -0.31
NUP54-202ENST00000502850 NAP1L1P55209 391 aaKnown RBP13.12□□□□□ -0.31
NUP54-202ENST00000502850 CTTNQ14247 550 aaKnown RBP13.12□□□□□ -0.31
NUP54-202ENST00000502850 PPP2R5AQ15172 486 aa13.12□□□□□ -0.31
NUP54-202ENST00000502850 NAB2Q15742 525 aa13.12□□□□□ -0.31
NUP54-202ENST00000502850 DCAF17Q5H9S7 520 aaPredicted RBP13.12□□□□□ -0.31
NUP54-202ENST00000502850 KIAA1755Q5JYT7 1200 aa13.12□□□□□ -0.31
NUP54-202ENST00000502850 FAM178BQ8IXR5 827 aa13.12□□□□□ -0.31
NUP54-202ENST00000502850 PRPF38AQ8NAV1 312 aaKnown RBP13.12□□□□□ -0.31
NUP54-202ENST00000502850 OSBPL9Q96SU4 736 aa13.12□□□□□ -0.31
NUP54-202ENST00000502850 TIPINQ9BVW5 301 aa13.12□□□□□ -0.31
NUP54-202ENST00000502850 TMEM39BQ9GZU3 492 aa13.12□□□□□ -0.31
NUP54-202ENST00000502850 MLXIPQ9HAP2 919 aa13.12□□□□□ -0.31
NUP54-202ENST00000502850 MED4Q9NPJ6 270 aa13.12□□□□□ -0.31
NUP54-202ENST00000502850 RGL1Q9NZL6 768 aa13.12□□□□□ -0.31
NUP54-202ENST00000502850 TFR2Q9UP52 801 aa13.12□□□□□ -0.31
NUP54-202ENST00000502850 DUSP10Q9Y6W6 482 aa13.12□□□□□ -0.31
NUP54-202ENST00000502850 SCN4AP35499 1836 aa13.12□□□□□ -0.31
NUP54-202ENST00000502850 COL4A5P29400 1685 aa13.12□□□□□ -0.31
NUP54-202ENST00000502850 IPO5O00410 1097 aaKnown RBP13.11□□□□□ -0.31
NUP54-202ENST00000502850 CHMP2AO43633 222 aa13.11□□□□□ -0.31
NUP54-202ENST00000502850 CCDC172P0C7W6 258 aa13.11□□□□□ -0.31
NUP54-202ENST00000502850 UCHL3P15374 230 aa13.11□□□□□ -0.31
NUP54-202ENST00000502850 HOXD13P35453 343 aa13.11□□□□□ -0.31
NUP54-202ENST00000502850 GLE1Q53GS7 698 aaKnown RBP13.11□□□□□ -0.31
NUP54-202ENST00000502850 KLHDC7AQ5VTJ3 777 aa13.11□□□□□ -0.31
NUP54-202ENST00000502850 TCERG1LQ5VWI1 586 aa13.11□□□□□ -0.31
NUP54-202ENST00000502850 B3GNT9Q6UX72 402 aa13.11□□□□□ -0.31
NUP54-202ENST00000502850 FAM186BQ8IYM0 893 aa13.11□□□□□ -0.31
NUP54-202ENST00000502850 SLC17A8Q8NDX2 589 aa13.11□□□□□ -0.31
NUP54-202ENST00000502850 VTI1AQ96AJ9 217 aa13.11□□□□□ -0.31
NUP54-202ENST00000502850 CRACR2AQ9BSW2 395 aa13.11□□□□□ -0.31
NUP54-202ENST00000502850 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.11□□□□□ -0.31
NUP54-202ENST00000502850 FRMD4BQ9Y2L6 1034 aa13.11□□□□□ -0.31
NUP54-202ENST00000502850 GRID2IPA4D2P6 1211 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 IQCA1LA6NCM1 817 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 RSPH10B2B2RC85 870 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 CES2O00748 559 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 TLR2O60603 784 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 SRGAP2O75044 1071 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 AKAP3O75969 853 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 RSPH10BP0C881 870 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 FERP16591 822 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 ERCC3P19447 782 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 RPS12P25398 132 aaKnown RBP13.1□□□□□ -0.31
NUP54-202ENST00000502850 PON1P27169 355 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 HTRA3P83110 453 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 CASP8Q14790 479 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 CFAP221Q4G0U5 840 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 CIAPIN1Q6FI81 312 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 CREG2Q8IUH2 290 aa13.1□□□□□ -0.31
NUP54-202ENST00000502850 SLC9A9Q8IVB4 645 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms