RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 ARL8AQ96BM9 186 aa17.62■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 RASSF4Q9H2L5 321 aa17.62■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 BCAS3Q9H6U6 928 aa17.62■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 DICER1Q9UPY3 1922 aaKnown RBP17.62■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 FAM86B1E9PN63 330 aa17.62■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 FAM86B2P0C5J1 330 aa17.62■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 FAM153BP0C7A2 387 aa17.62■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 MYBP10242 640 aa17.62■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 PON1P27169 355 aa17.62■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 IRAK1P51617 712 aa17.62■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 FAM153CQ494X1 144 aa17.62■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 CIAPIN1Q6FI81 312 aa17.62■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 IFT20Q8IY31 132 aa17.62■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 C10orf67Q8IYJ2 551 aa17.62■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 FAM153AQ9UHL3 310 aa17.62■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 DNM3Q9UQ16 869 aa17.62■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 OPA1O60313 960 aa17.61■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 HEXIM1O94992 359 aaKnown RBP17.61■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 AFPP02771 609 aaKnown RBP17.61■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 UCHL3P15374 230 aa17.61■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 EPS15P42566 896 aa17.61■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 PPFIA1Q13136 1202 aa17.61■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 CERKLQ49MI3 558 aaPredicted RBP17.61■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 SAMD7Q7Z3H4 446 aa17.61■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 RBM46Q8TBY0 533 aaKnown RBP17.61■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 ZDHHC15Q96MV8 337 aa17.61■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 ZIM3Q96PE6 472 aa17.61■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 MYCBPQ99417 103 aaPredicted RBP17.61■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 EPB41L5Q9HCM4 733 aa17.61■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 FAM198AQ9UFP1 575 aa17.61■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 ARMCX3Q9UH62 379 aaPredicted RBP17.61■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 NFU1Q9UMS0 254 aa17.61■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 ASTN2O75129 1339 aaPredicted RBP17.61■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 ESYT3A0FGR9 886 aa17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 AKAP3O75969 853 aa17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 GMPSP49915 693 aaPredicted RBP17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 GTF2A1P52655 376 aaPredicted RBP17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 TCP10Q12799 353 aa17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 EPHA7Q15375 998 aa17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 KRT12Q99456 494 aa17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 TMEM59LQ9UK28 342 aa17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 AJAP1Q9UKB5 411 aaPredicted RBP17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 NENFQ9UMX5 172 aa17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 LTBP3Q9NS15 1303 aa17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 RSPH10B2B2RC85 870 aa17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 FZD9O00144 591 aa17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 PDXKO00764 312 aa17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 RSPH10BP0C881 870 aa17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 TAL1P17542 331 aaPredicted RBP17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 SREBF1P36956 1147 aa17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 GUCY2DQ02846 1103 aa17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 BMT2Q1RMZ1 405 aa17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 RSBN1LQ6PCB5 846 aaPredicted RBP17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 IQCKQ8N0W5 287 aa17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 ERMNQ8TAM6 284 aa17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 CASKIN2Q8WXE0 1202 aa17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 AMNQ9BXJ7 453 aa17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 SIX2Q9NPC8 291 aa17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 VAV3Q9UKW4 847 aa17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 ASTN1O14525 1302 aa17.6■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 PSME4Q14997 1843 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 OPLAHO14841 1288 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 MSH4O15457 936 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 HSF2BPO75031 334 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 ZBTB48P10074 688 aaPredicted RBP17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 GRIPAP1Q4V328 841 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 C10orf76Q5T2E6 689 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 TATDN1Q6P1N9 297 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 DNAAF5Q86Y56 855 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 USP38Q8NB14 1042 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 PIK3R5Q8WYR1 880 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 NCAPGQ9BPX3 1015 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 GRIN2DO15399 1336 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 SMCHD1A6NHR9 2005 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 F5H6K3 240 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 VIL1P09327 827 aaKnown RBP17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 CIITAP33076 1130 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 PRKCIP41743 596 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 CASP4P49662 377 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 RNASE9P60153 205 aaKnown RBP17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 KLRC3Q07444 240 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 TRADDQ15628 312 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 EXOC3L4Q17RC7 722 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 TBC1D10BQ4KMP7 808 aaPredicted RBP17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 LRRC57Q8N9N7 239 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 FAM20AQ96MK3 541 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 RUSC1Q9BVN2 902 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 CAPS2Q9BXY5 557 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 POLD4Q9HCU8 107 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 PI4KBQ9UBF8 816 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 NAGPAQ9UK23 515 aa17.59■□□□□ 0.41
MSH5-SAPCD1-208ENST00000498473 CLRN2A0PK11 232 aa17.58■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 CES2O00748 559 aa17.58■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 CALUO43852 315 aaPredicted RBP17.58■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 PAK2Q13177 524 aa17.58■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 USH1GQ495M9 461 aa17.58■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 MCTP2Q6DN12 878 aa17.58■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 FBXO11Q86XK2 927 aa17.58■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 MREGQ8N565 214 aa17.58■□□□□ 0.4
MSH5-SAPCD1-208ENST00000498473 CYP2W1Q8TAV3 490 aa17.58■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms