RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 TROAPQ12815 778 aa18.92■□□□□ 0.62
VIM-208ENST00000497849 CWF19L1Q69YN2 538 aaKnown RBP18.92■□□□□ 0.62
VIM-208ENST00000497849 CDHR1Q96JP9 859 aa18.92■□□□□ 0.62
VIM-208ENST00000497849 NECTIN4Q96NY8 510 aa18.92■□□□□ 0.62
VIM-208ENST00000497849 ADAM2Q99965 735 aa18.92■□□□□ 0.62
VIM-208ENST00000497849 ADAM7Q9H2U9 754 aa18.92■□□□□ 0.62
VIM-208ENST00000497849 ENTPD7Q9NQZ7 604 aa18.92■□□□□ 0.62
VIM-208ENST00000497849 NOC2LQ9Y3T9 749 aaKnown RBP18.92■□□□□ 0.62
VIM-208ENST00000497849 SMIM35A0A1B0GVV1 85 aa18.91■□□□□ 0.62
VIM-208ENST00000497849 MED19A0JLT2 244 aaPredicted RBP18.91■□□□□ 0.62
VIM-208ENST00000497849 FGFR1P11362 822 aa18.91■□□□□ 0.62
VIM-208ENST00000497849 LAG3P18627 525 aa18.91■□□□□ 0.62
VIM-208ENST00000497849 PDE4AP27815 886 aa18.91■□□□□ 0.62
VIM-208ENST00000497849 PLCB4Q15147 1175 aa18.91■□□□□ 0.62
VIM-208ENST00000497849 SLC24A5Q71RS6 500 aa18.91■□□□□ 0.62
VIM-208ENST00000497849 NME8Q8N427 588 aa18.91■□□□□ 0.62
VIM-208ENST00000497849 TMEM40Q8WWA1 233 aa18.91■□□□□ 0.62
VIM-208ENST00000497849 CASP10Q92851 521 aa18.91■□□□□ 0.62
VIM-208ENST00000497849 CDHR5Q9HBB8 845 aa18.91■□□□□ 0.62
VIM-208ENST00000497849 NGRNQ9NPE2 291 aaKnown RBP18.91■□□□□ 0.62
VIM-208ENST00000497849 C1orf112Q9NSG2 853 aa18.91■□□□□ 0.62
VIM-208ENST00000497849 HCFC2Q9Y5Z7 792 aa18.91■□□□□ 0.62
VIM-208ENST00000497849 UBIAD1Q9Y5Z9 338 aa18.91■□□□□ 0.62
VIM-208ENST00000497849 NCOR2Q9Y618 2525 aa18.91■□□□□ 0.62
VIM-208ENST00000497849 WEE2P0C1S8 567 aa18.9■□□□□ 0.62
VIM-208ENST00000497849 ITIH3Q06033 890 aa18.9■□□□□ 0.62
VIM-208ENST00000497849 TPRNQ4KMQ1 711 aa18.9■□□□□ 0.62
VIM-208ENST00000497849 CES5AQ6NT32 575 aa18.9■□□□□ 0.62
VIM-208ENST00000497849 MTHFD1LQ6UB35 978 aa18.9■□□□□ 0.62
VIM-208ENST00000497849 LRRC55Q6ZSA7 311 aa18.9■□□□□ 0.62
VIM-208ENST00000497849 CUL5Q93034 780 aa18.9■□□□□ 0.62
VIM-208ENST00000497849 MFSD1Q9H3U5 465 aa18.9■□□□□ 0.62
VIM-208ENST00000497849 LIMD1Q9UGP4 676 aa18.9■□□□□ 0.62
VIM-208ENST00000497849 PUF60Q9UHX1 559 aaKnown RBP18.9■□□□□ 0.62
VIM-208ENST00000497849 EVPLQ92817 2033 aa18.9■□□□□ 0.62
VIM-208ENST00000497849 DENND3A2RUS2 1198 aa18.89■□□□□ 0.61
VIM-208ENST00000497849 PI15O43692 258 aa18.89■□□□□ 0.61
VIM-208ENST00000497849 RPS6KA5O75582 802 aa18.89■□□□□ 0.61
VIM-208ENST00000497849 PBX3P40426 434 aa18.89■□□□□ 0.61
VIM-208ENST00000497849 IRX6P78412 446 aaPredicted RBP18.89■□□□□ 0.61
VIM-208ENST00000497849 FAM189BP81408 668 aa18.89■□□□□ 0.61
VIM-208ENST00000497849 MTMR1Q13613 665 aa18.89■□□□□ 0.61
VIM-208ENST00000497849 ZDHHC14Q8IZN3 488 aa18.89■□□□□ 0.61
VIM-208ENST00000497849 RMDN1Q96DB5 314 aa18.89■□□□□ 0.61
VIM-208ENST00000497849 TMEM161AQ9NX61 479 aa18.89■□□□□ 0.61
VIM-208ENST00000497849 ST3GAL5Q9UNP4 418 aa18.89■□□□□ 0.61
VIM-208ENST00000497849 GINS2Q9Y248 185 aa18.89■□□□□ 0.61
VIM-208ENST00000497849 EPG5Q9HCE0 2579 aa18.88■□□□□ 0.61
VIM-208ENST00000497849 NPR3P17342 541 aa18.88■□□□□ 0.61
VIM-208ENST00000497849 KCNT2Q6UVM3 1135 aa18.88■□□□□ 0.61
VIM-208ENST00000497849 FAM43BQ6ZT52 329 aaPredicted RBP18.88■□□□□ 0.61
VIM-208ENST00000497849 TMC7Q7Z402 723 aa18.88■□□□□ 0.61
VIM-208ENST00000497849 FLCNQ8NFG4 579 aa18.88■□□□□ 0.61
VIM-208ENST00000497849 AZI2Q9H6S1 392 aa18.88■□□□□ 0.61
VIM-208ENST00000497849 ATP6V0A4Q9HBG4 840 aa18.88■□□□□ 0.61
VIM-208ENST00000497849 JPH1Q9HDC5 661 aaPredicted RBP18.88■□□□□ 0.61
VIM-208ENST00000497849 DIAPH3Q9NSV4 1193 aa18.88■□□□□ 0.61
VIM-208ENST00000497849 RNF216Q9NWF9 866 aaPredicted RBP18.88■□□□□ 0.61
VIM-208ENST00000497849 FRYLO94915 3013 aa18.88■□□□□ 0.61
VIM-208ENST00000497849 DENND4AQ7Z401 1863 aa18.88■□□□□ 0.61
VIM-208ENST00000497849 C2orf71A6NGG8 1288 aa18.87■□□□□ 0.61
VIM-208ENST00000497849 AOC1P19801 751 aa18.87■□□□□ 0.61
VIM-208ENST00000497849 MTHFRP42898 656 aa18.87■□□□□ 0.61
VIM-208ENST00000497849 ANGPT1Q15389 498 aa18.87■□□□□ 0.61
VIM-208ENST00000497849 PLPPR4Q7Z2D5 763 aa18.87■□□□□ 0.61
VIM-208ENST00000497849 CCDC105Q8IYK2 499 aa18.87■□□□□ 0.61
VIM-208ENST00000497849 MRPL43Q8N983 215 aaKnown RBP18.87■□□□□ 0.61
VIM-208ENST00000497849 TDRD5Q8NAT2 981 aaKnown RBP18.87■□□□□ 0.61
VIM-208ENST00000497849 TNPO1Q92973 898 aaKnown RBP18.87■□□□□ 0.61
VIM-208ENST00000497849 CASD1Q96PB1 797 aa18.87■□□□□ 0.61
VIM-208ENST00000497849 LNPKQ9C0E8 428 aa18.87■□□□□ 0.61
VIM-208ENST00000497849 IL25Q9H293 177 aa18.87■□□□□ 0.61
VIM-208ENST00000497849 ELAC1Q9H777 363 aaKnown RBP18.87■□□□□ 0.61
VIM-208ENST00000497849 JADE2Q9NQC1 790 aa18.87■□□□□ 0.61
VIM-208ENST00000497849 RNF19AQ9NV58 838 aa18.87■□□□□ 0.61
VIM-208ENST00000497849 SLC9A2Q9UBY0 812 aa18.87■□□□□ 0.61
VIM-208ENST00000497849 CEP250Q9BV73 2442 aa18.86■□□□□ 0.61
VIM-208ENST00000497849 IFIT3O14879 490 aaKnown RBP18.86■□□□□ 0.61
VIM-208ENST00000497849 MAFGO15525 162 aa18.86■□□□□ 0.61
VIM-208ENST00000497849 CLASP2O75122 1294 aaKnown RBP18.86■□□□□ 0.61
VIM-208ENST00000497849 KLRC1P26715 233 aa18.86■□□□□ 0.61
VIM-208ENST00000497849 STAT5BP51692 787 aa18.86■□□□□ 0.61
VIM-208ENST00000497849 KANK3Q6NY19 840 aa18.86■□□□□ 0.61
VIM-208ENST00000497849 KIAA0319LQ8IZA0 1049 aa18.86■□□□□ 0.61
VIM-208ENST00000497849 C12orf76Q8N812 135 aaPredicted RBP18.86■□□□□ 0.61
VIM-208ENST00000497849 FEZF2Q8TBJ5 459 aa18.86■□□□□ 0.61
VIM-208ENST00000497849 TMEM117Q9H0C3 514 aa18.86■□□□□ 0.61
VIM-208ENST00000497849 GPR182O15218 404 aa18.85■□□□□ 0.61
VIM-208ENST00000497849 ACTR2P61160 394 aa18.85■□□□□ 0.61
VIM-208ENST00000497849 DSC3Q14574 896 aa18.85■□□□□ 0.61
VIM-208ENST00000497849 SMC1AQ14683 1233 aaKnown RBP18.85■□□□□ 0.61
VIM-208ENST00000497849 RARS2Q5T160 578 aaKnown RBP18.85■□□□□ 0.61
VIM-208ENST00000497849 KIAA1841Q6NSI8 718 aa18.85■□□□□ 0.61
VIM-208ENST00000497849 FAM228AQ86W67 206 aa18.85■□□□□ 0.61
VIM-208ENST00000497849 ZNF558Q96NG5 402 aa18.85■□□□□ 0.61
VIM-208ENST00000497849 SPZ1Q9BXG8 430 aa18.85■□□□□ 0.61
VIM-208ENST00000497849 USTQ9Y2C2 406 aa18.85■□□□□ 0.61
VIM-208ENST00000497849 KMT2BQ9UMN6 2715 aaPredicted RBP18.85■□□□□ 0.61
VIM-208ENST00000497849 PPM1AP35813 382 aa18.84■□□□□ 0.61
VIM-208ENST00000497849 KRT17Q04695 432 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms