RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 KLHL23Q8NBE8 558 aa14.39□□□□□ -0.11
SKA1-205ENST00000494518 HCSTQ9UBK5 93 aa14.39□□□□□ -0.11
SKA1-205ENST00000494518 FAM50BQ9Y247 325 aa14.39□□□□□ -0.11
SKA1-205ENST00000494518 NOC2LQ9Y3T9 749 aaKnown RBP14.39□□□□□ -0.11
SKA1-205ENST00000494518 MBTPS2O43462 519 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 DCXO43602 365 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 ATG7O95352 703 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 RPLP2P05387 115 aaKnown RBP14.38□□□□□ -0.11
SKA1-205ENST00000494518 STAG3L1P0CL83 205 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 ALADP13716 330 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 ADD1P35611 737 aaKnown RBP14.38□□□□□ -0.11
SKA1-205ENST00000494518 CLK2P49760 499 aaKnown RBP14.38□□□□□ -0.11
SKA1-205ENST00000494518 NDUFV1P49821 464 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 FGD1P98174 961 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 APOBRQ0VD83 1088 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 AP3B2Q13367 1082 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 CSPP1Q1MSJ5 1256 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 BMP2KLQ5H9B9 411 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 SPOUT1Q5T280 376 aaKnown RBP14.38□□□□□ -0.11
SKA1-205ENST00000494518 FAM160B1Q5W0V3 765 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 PDXDC2PQ6P474 469 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 ABHD15Q6UXT9 468 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 RBM23Q86U06 439 aaKnown RBP14.38□□□□□ -0.11
SKA1-205ENST00000494518 ADHFE1Q8IWW8 467 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 CKAP2LQ8IYA6 745 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 CRIPAKQ8N1N5 446 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 SPPL3Q8TCT6 385 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 POF1BQ8WVV4 589 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 TMEM40Q8WWA1 233 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 TNPO1Q92973 898 aaKnown RBP14.38□□□□□ -0.11
SKA1-205ENST00000494518 PLVAPQ9BX97 442 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 ZNF302Q9NR11 478 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 SQORQ9Y6N5 450 aa14.38□□□□□ -0.11
SKA1-205ENST00000494518 IGKV6D-21A0A0A0MT36 114 aa14.37□□□□□ -0.11
SKA1-205ENST00000494518 PRR33A8MZF0 331 aa14.37□□□□□ -0.11
SKA1-205ENST00000494518 NCK2O43639 380 aa14.37□□□□□ -0.11
SKA1-205ENST00000494518 HBP1O60381 514 aa14.37□□□□□ -0.11
SKA1-205ENST00000494518 RPS6KA5O75582 802 aa14.37□□□□□ -0.11
SKA1-205ENST00000494518 KIZQ2M2Z5 673 aa14.37□□□□□ -0.11
SKA1-205ENST00000494518 SWSAP1Q6NVH7 229 aa14.37□□□□□ -0.11
SKA1-205ENST00000494518 MIS18BP1Q6P0N0 1132 aa14.37□□□□□ -0.11
SKA1-205ENST00000494518 KIAA0319LQ8IZA0 1049 aa14.37□□□□□ -0.11
SKA1-205ENST00000494518 RASGRP4Q8TDF6 673 aa14.37□□□□□ -0.11
SKA1-205ENST00000494518 ATP8B4Q8TF62 1192 aa14.37□□□□□ -0.11
SKA1-205ENST00000494518 OSMRQ99650 979 aa14.37□□□□□ -0.11
SKA1-205ENST00000494518 ERVK-5Q9HDB9 667 aa14.37□□□□□ -0.11
SKA1-205ENST00000494518 PRKAG3Q9UGI9 489 aa14.37□□□□□ -0.11
SKA1-205ENST00000494518 MUTYHQ9UIF7 546 aa14.37□□□□□ -0.11
SKA1-205ENST00000494518 CD207Q9UJ71 328 aa14.37□□□□□ -0.11
SKA1-205ENST00000494518 KDM3AQ9Y4C1 1321 aa14.37□□□□□ -0.11
SKA1-205ENST00000494518 ZDBF2Q9HCK1 2354 aa14.37□□□□□ -0.11
SKA1-205ENST00000494518 IGLV3-22A0A075B6J6 115 aa14.36□□□□□ -0.11
SKA1-205ENST00000494518 DENND3A2RUS2 1198 aa14.36□□□□□ -0.11
SKA1-205ENST00000494518 C19orf67A6NJJ6 358 aa14.36□□□□□ -0.11
SKA1-205ENST00000494518 TBKBP1A7MCY6 615 aa14.36□□□□□ -0.11
SKA1-205ENST00000494518 ZBTB42B2RXF5 422 aa14.36□□□□□ -0.11
SKA1-205ENST00000494518 hCG_1984214I3L0E3 225 aa14.36□□□□□ -0.11
SKA1-205ENST00000494518 IPO5O00410 1097 aaKnown RBP14.36□□□□□ -0.11
SKA1-205ENST00000494518 DHX15O43143 795 aaKnown RBP14.36□□□□□ -0.11
SKA1-205ENST00000494518 VTNP04004 478 aa14.36□□□□□ -0.11
SKA1-205ENST00000494518 ATP4AP20648 1035 aa14.36□□□□□ -0.11
SKA1-205ENST00000494518 NRIP1P48552 1158 aa14.36□□□□□ -0.11
SKA1-205ENST00000494518 SARSP49591 514 aaKnown RBP14.36□□□□□ -0.11
SKA1-205ENST00000494518 METAP2P50579 478 aaKnown RBP eCLIP14.36□□□□□ -0.11
SKA1-205ENST00000494518 SMAD4Q13485 552 aaKnown RBP14.36□□□□□ -0.11
SKA1-205ENST00000494518 SMAD2Q15796 467 aaKnown RBP14.36□□□□□ -0.11
SKA1-205ENST00000494518 PFKFB3Q16875 520 aaPredicted RBP14.36□□□□□ -0.11
SKA1-205ENST00000494518 FAM102BQ5T8I3 360 aa14.36□□□□□ -0.11
SKA1-205ENST00000494518 Q6ZUG5 572 aa14.36□□□□□ -0.11
SKA1-205ENST00000494518 METTL13Q8N6R0 699 aa14.36□□□□□ -0.11
SKA1-205ENST00000494518 ZNF713Q8N859 430 aaPredicted RBP14.36□□□□□ -0.11
SKA1-205ENST00000494518 P2RX5Q93086 422 aa14.36□□□□□ -0.11
SKA1-205ENST00000494518 ADAM2Q99965 735 aa14.36□□□□□ -0.11
SKA1-205ENST00000494518 ZNF577Q9BSK1 485 aa14.36□□□□□ -0.11
SKA1-205ENST00000494518 ST3GAL5Q9UNP4 418 aa14.36□□□□□ -0.11
SKA1-205ENST00000494518 PCDHB7Q9Y5E2 793 aa14.36□□□□□ -0.11
SKA1-205ENST00000494518 PER2O15055 1255 aa14.35□□□□□ -0.11
SKA1-205ENST00000494518 CDC45O75419 566 aa14.35□□□□□ -0.11
SKA1-205ENST00000494518 SLC26A2P50443 739 aa14.35□□□□□ -0.11
SKA1-205ENST00000494518 RBM10P98175 930 aaKnown RBP14.35□□□□□ -0.11
SKA1-205ENST00000494518 ADAM15Q13444 863 aa14.35□□□□□ -0.11
SKA1-205ENST00000494518 ZNF484Q5JVG2 852 aa14.35□□□□□ -0.11
SKA1-205ENST00000494518 NIPA1Q7RTP0 329 aa14.35□□□□□ -0.11
SKA1-205ENST00000494518 FAM228AQ86W67 206 aa14.35□□□□□ -0.11
SKA1-205ENST00000494518 NME8Q8N427 588 aa14.35□□□□□ -0.11
SKA1-205ENST00000494518 BRF1Q92994 677 aa14.35□□□□□ -0.11
SKA1-205ENST00000494518 PHKBQ93100 1093 aa14.35□□□□□ -0.11
SKA1-205ENST00000494518 ZNF668Q96K58 619 aaPredicted RBP14.35□□□□□ -0.11
SKA1-205ENST00000494518 JAKMIP1Q96N16 626 aaKnown RBP14.35□□□□□ -0.11
SKA1-205ENST00000494518 TCEAL9Q9UHQ7 104 aa14.35□□□□□ -0.11
SKA1-205ENST00000494518 BARX2Q9UMQ3 279 aaPredicted RBP14.35□□□□□ -0.11
SKA1-205ENST00000494518 COL1A2P08123 1366 aa14.34□□□□□ -0.11
SKA1-205ENST00000494518 C22orf31O95567 290 aa14.34□□□□□ -0.11
SKA1-205ENST00000494518 GLP2RO95838 553 aa14.34□□□□□ -0.11
SKA1-205ENST00000494518 FGFR1P11362 822 aa14.34□□□□□ -0.11
SKA1-205ENST00000494518 CLCN3P51790 818 aa14.34□□□□□ -0.11
SKA1-205ENST00000494518 KRT32Q14532 448 aa14.34□□□□□ -0.11
SKA1-205ENST00000494518 PRR16Q569H4 304 aa14.34□□□□□ -0.11
SKA1-205ENST00000494518 REXO1Q8N1G1 1221 aaKnown RBP14.34□□□□□ -0.11
SKA1-205ENST00000494518 MICAL1Q8TDZ2 1067 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms