RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 ZNF577Q9BSK1 485 aa13.15□□□□□ -0.3
COL6A3-213ENST00000493475 PADI3Q9ULW8 664 aa13.15□□□□□ -0.3
COL6A3-213ENST00000493475 GINS2Q9Y248 185 aa13.15□□□□□ -0.3
COL6A3-213ENST00000493475 REV3LO60673 3130 aa13.15□□□□□ -0.31
COL6A3-213ENST00000493475 STXBP3O00186 592 aa13.14□□□□□ -0.31
COL6A3-213ENST00000493475 IPO5O00410 1097 aaKnown RBP13.14□□□□□ -0.31
COL6A3-213ENST00000493475 HOXA2O43364 376 aa13.14□□□□□ -0.31
COL6A3-213ENST00000493475 PSAPP07602 524 aa13.14□□□□□ -0.31
COL6A3-213ENST00000493475 NDUFV1P49821 464 aa13.14□□□□□ -0.31
COL6A3-213ENST00000493475 TMEM62Q0P6H9 643 aa13.14□□□□□ -0.31
COL6A3-213ENST00000493475 TSGA10IPQ3SY00 556 aa13.14□□□□□ -0.31
COL6A3-213ENST00000493475 ADHFE1Q8IWW8 467 aa13.14□□□□□ -0.31
COL6A3-213ENST00000493475 REXO1Q8N1G1 1221 aaKnown RBP13.14□□□□□ -0.31
COL6A3-213ENST00000493475 BBXQ8WY36 941 aaPredicted RBP13.14□□□□□ -0.31
COL6A3-213ENST00000493475 FAM167AQ96KS9 214 aa13.14□□□□□ -0.31
COL6A3-213ENST00000493475 UIMC1Q96RL1 719 aa13.14□□□□□ -0.31
COL6A3-213ENST00000493475 MAP7D2Q96T17 732 aa13.14□□□□□ -0.31
COL6A3-213ENST00000493475 SAMM50Q9Y512 469 aa13.14□□□□□ -0.31
COL6A3-213ENST00000493475 RALGAPA2Q2PPJ7 1873 aa13.14□□□□□ -0.31
COL6A3-213ENST00000493475 BRWD1Q9NSI6 2320 aa13.13□□□□□ -0.31
COL6A3-213ENST00000493475 ESYT2A0FGR8 921 aa13.13□□□□□ -0.31
COL6A3-213ENST00000493475 DDX39AO00148 427 aaKnown RBP13.13□□□□□ -0.31
COL6A3-213ENST00000493475 GRM6O15303 877 aa13.13□□□□□ -0.31
COL6A3-213ENST00000493475 MAGEB2O15479 319 aa13.13□□□□□ -0.31
COL6A3-213ENST00000493475 ATG7O95352 703 aa13.13□□□□□ -0.31
COL6A3-213ENST00000493475 ARP10275 920 aa13.13□□□□□ -0.31
COL6A3-213ENST00000493475 KLRC1P26715 233 aa13.13□□□□□ -0.31
COL6A3-213ENST00000493475 PSMA5P28066 241 aa13.13□□□□□ -0.31
COL6A3-213ENST00000493475 SARSP49591 514 aaKnown RBP13.13□□□□□ -0.31
COL6A3-213ENST00000493475 EXOSC10Q01780 885 aaKnown RBP13.13□□□□□ -0.31
COL6A3-213ENST00000493475 UBE3AQ05086 875 aa13.13□□□□□ -0.31
COL6A3-213ENST00000493475 SMAD4Q13485 552 aaKnown RBP13.13□□□□□ -0.31
COL6A3-213ENST00000493475 COL19A1Q14993 1142 aa13.13□□□□□ -0.31
COL6A3-213ENST00000493475 PFKFB3Q16875 520 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-213ENST00000493475 PDE12Q6L8Q7 609 aaKnown RBP13.13□□□□□ -0.31
COL6A3-213ENST00000493475 ZNF746Q6NUN9 644 aaPredicted RBP13.13□□□□□ -0.31
COL6A3-213ENST00000493475 MICAL1Q8TDZ2 1067 aa13.13□□□□□ -0.31
COL6A3-213ENST00000493475 IGFLR1Q9H665 355 aa13.13□□□□□ -0.31
COL6A3-213ENST00000493475 AGO3Q9H9G7 860 aaKnown RBP13.13□□□□□ -0.31
COL6A3-213ENST00000493475 PUF60Q9UHX1 559 aaKnown RBP13.13□□□□□ -0.31
COL6A3-213ENST00000493475 CD207Q9UJ71 328 aa13.13□□□□□ -0.31
COL6A3-213ENST00000493475 PLAGL2Q9UPG8 496 aa13.13□□□□□ -0.31
COL6A3-213ENST00000493475 TELO2Q9Y4R8 837 aa13.13□□□□□ -0.31
COL6A3-213ENST00000493475 ZSCAN20P17040 1043 aaPredicted RBP13.12□□□□□ -0.31
COL6A3-213ENST00000493475 IBSPP21815 317 aaPredicted RBP13.12□□□□□ -0.31
COL6A3-213ENST00000493475 ITGB3BPQ13352 177 aaPredicted RBP13.12□□□□□ -0.31
COL6A3-213ENST00000493475 BMS1Q14692 1282 aaKnown RBP13.12□□□□□ -0.31
COL6A3-213ENST00000493475 SMAD2Q15796 467 aaKnown RBP13.12□□□□□ -0.31
COL6A3-213ENST00000493475 PAN2Q504Q3 1202 aaKnown RBP13.12□□□□□ -0.31
COL6A3-213ENST00000493475 JAKMIP3Q5VZ66 844 aa13.12□□□□□ -0.31
COL6A3-213ENST00000493475 SWSAP1Q6NVH7 229 aa13.12□□□□□ -0.31
COL6A3-213ENST00000493475 BLOC1S2Q6QNY1 142 aa13.12□□□□□ -0.31
COL6A3-213ENST00000493475 SLC24A5Q71RS6 500 aa13.12□□□□□ -0.31
COL6A3-213ENST00000493475 ABI1Q8IZP0 508 aa13.12□□□□□ -0.31
COL6A3-213ENST00000493475 METTL13Q8N6R0 699 aa13.12□□□□□ -0.31
COL6A3-213ENST00000493475 CYP2W1Q8TAV3 490 aa13.12□□□□□ -0.31
COL6A3-213ENST00000493475 PGBD1Q96JS3 809 aa13.12□□□□□ -0.31
COL6A3-213ENST00000493475 PCYT2Q99447 389 aa13.12□□□□□ -0.31
COL6A3-213ENST00000493475 C22orf23Q9BZE7 217 aa13.12□□□□□ -0.31
COL6A3-213ENST00000493475 OSBPL7Q9BZF2 842 aa13.12□□□□□ -0.31
COL6A3-213ENST00000493475 KCNH6Q9H252 994 aa13.12□□□□□ -0.31
COL6A3-213ENST00000493475 RC3H2Q9HBD1 1191 aaKnown RBP13.12□□□□□ -0.31
COL6A3-213ENST00000493475 ATP6V0A4Q9HBG4 840 aa13.12□□□□□ -0.31
COL6A3-213ENST00000493475 ALG13Q9NP73 1137 aaKnown RBP13.12□□□□□ -0.31
COL6A3-213ENST00000493475 PCDHA10Q9Y5I2 948 aa13.12□□□□□ -0.31
COL6A3-213ENST00000493475 MRPL42Q9Y6G3 142 aaKnown RBP13.12□□□□□ -0.31
COL6A3-213ENST00000493475 IGKV6D-21A0A0A0MT36 114 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 CARNS1A5YM72 827 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 FAM86C2PA6NEL3 165 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 WDR64B1ANS9 1081 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 REC8O95072 547 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 CSPG5O95196 566 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 CYP3A4P08684 503 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 CLK2P49760 499 aaKnown RBP13.11□□□□□ -0.31
COL6A3-213ENST00000493475 NUBP1P53384 320 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 CRYBB1P53674 252 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-213ENST00000493475 CDC42EP1Q00587 391 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 ZP2Q05996 745 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 HYAL1Q12794 435 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 CTC1Q2NKJ3 1217 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 ABHD15Q6UXT9 468 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 TRIM22Q8IYM9 498 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 KLHL23Q8NBE8 558 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 TRAPPC12Q8WVT3 735 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 MFSD14AQ96MC6 490 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 TCEANC2Q96MN5 208 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 SCLT1Q96NL6 688 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 CDCA3Q99618 268 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-213ENST00000493475 ZMYND12Q9H0C1 365 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 NRBP2Q9NSY0 501 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 RAPGEFL1Q9UHV5 662 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 BRPF3Q9ULD4 1205 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 PCDHB13Q9Y5F0 798 aa13.11□□□□□ -0.31
COL6A3-213ENST00000493475 DOCK5Q9H7D0 1870 aa13.1□□□□□ -0.31
COL6A3-213ENST00000493475 LAG3P18627 525 aa13.1□□□□□ -0.31
COL6A3-213ENST00000493475 SFNP31947 248 aa13.1□□□□□ -0.31
COL6A3-213ENST00000493475 PPM1AP35813 382 aa13.1□□□□□ -0.31
COL6A3-213ENST00000493475 FUT2Q10981 343 aa13.1□□□□□ -0.31
COL6A3-213ENST00000493475 PRR16Q569H4 304 aa13.1□□□□□ -0.31
COL6A3-213ENST00000493475 CPLX2Q6PUV4 134 aaKnown RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms