RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 PITRM1Q5JRX3 1037 aa5.74□□□□□ -1.49
VPS13A-212ENST00000493341 CATSPEREQ5SY80 951 aa5.74□□□□□ -1.49
VPS13A-212ENST00000493341 ESPNLQ6ZVH7 1005 aa5.74□□□□□ -1.49
VPS13A-212ENST00000493341 ABCF1Q8NE71 845 aaKnown RBP eCLIP5.74□□□□□ -1.49
VPS13A-212ENST00000493341 PGBD4Q96DM1 585 aa5.74□□□□□ -1.49
VPS13A-212ENST00000493341 FCRL2Q96LA5 508 aaPredicted RBP5.74□□□□□ -1.49
VPS13A-212ENST00000493341 U3KQE9 123 aa5.74□□□□□ -1.49
VPS13A-212ENST00000493341 SLC27A2O14975 620 aa5.73□□□□□ -1.49
VPS13A-212ENST00000493341 B3GALT2O43825 422 aa5.73□□□□□ -1.49
VPS13A-212ENST00000493341 BUB1BO60566 1050 aaPredicted RBP5.73□□□□□ -1.49
VPS13A-212ENST00000493341 PTPN1P18031 435 aaKnown RBP5.73□□□□□ -1.49
VPS13A-212ENST00000493341 RENBPP51606 427 aa5.73□□□□□ -1.49
VPS13A-212ENST00000493341 SLC16A1P53985 500 aa5.73□□□□□ -1.49
VPS13A-212ENST00000493341 CCT2P78371 535 aaKnown RBP5.73□□□□□ -1.49
VPS13A-212ENST00000493341 MRPS9P82933 396 aaKnown RBP5.73□□□□□ -1.49
VPS13A-212ENST00000493341 BIRC3Q13489 604 aa5.73□□□□□ -1.49
VPS13A-212ENST00000493341 MOGSQ13724 837 aa5.73□□□□□ -1.49
VPS13A-212ENST00000493341 KRT72Q14CN4 511 aa5.73□□□□□ -1.49
VPS13A-212ENST00000493341 EPHA7Q15375 998 aa5.73□□□□□ -1.49
VPS13A-212ENST00000493341 NPNTQ6UXI9 565 aa5.73□□□□□ -1.49
VPS13A-212ENST00000493341 SPACA3Q8IXA5 215 aa5.73□□□□□ -1.49
VPS13A-212ENST00000493341 Q8N1Y9 231 aa5.73□□□□□ -1.49
VPS13A-212ENST00000493341 NME8Q8N427 588 aa5.73□□□□□ -1.49
VPS13A-212ENST00000493341 UHMK1Q8TAS1 419 aaKnown RBP5.73□□□□□ -1.49
VPS13A-212ENST00000493341 PLEKHO2Q8TD55 490 aa5.73□□□□□ -1.49
VPS13A-212ENST00000493341 NACC1Q96RE7 527 aa5.73□□□□□ -1.49
VPS13A-212ENST00000493341 FAM83CQ9BQN1 747 aa5.73□□□□□ -1.49
VPS13A-212ENST00000493341 DPP7Q9UHL4 492 aa5.73□□□□□ -1.49
VPS13A-212ENST00000493341 GTF2A1LQ9UNN4 478 aa5.73□□□□□ -1.49
VPS13A-212ENST00000493341 PRSS38A1L453 326 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 PRAMEF25A6NGN4 478 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 FAM90A27PA6NNH2 459 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 GOLIM4O00461 696 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 GMPRP36959 345 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 CACNB3P54284 484 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 OXCT1P55809 520 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 CDK17Q00537 523 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 CYP27A1Q02318 531 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 TEKQ02763 1124 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 MBTPS1Q14703 1052 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 ALFQ53S48 1182 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 MROH9Q5TGP6 573 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 RNF220Q5VTB9 566 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 MBNL2Q5VZF2 373 aaKnown RBP5.72□□□□□ -1.49
VPS13A-212ENST00000493341 DUSP27Q5VZP5 1158 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 CCDC70Q6NSX1 233 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 NME9Q86XW9 330 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 PHYKPLQ8IUZ5 450 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 PRR18Q8N4B5 295 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 UBE2Q2Q8WVN8 375 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 AUTS2Q8WXX7 1259 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 RIN2Q8WYP3 895 aaPredicted RBP5.72□□□□□ -1.49
VPS13A-212ENST00000493341 FERMT2Q96AC1 680 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 MFSD14AQ96MC6 490 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 CRB3Q9BUF7 120 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 TRMT13Q9NUP7 481 aaKnown RBP5.72□□□□□ -1.49
VPS13A-212ENST00000493341 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.72□□□□□ -1.49
VPS13A-212ENST00000493341 L1RE1Q9UN81 338 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 ELL2O00472 640 aaPredicted RBP5.72□□□□□ -1.49
VPS13A-212ENST00000493341 FOXP2O15409 715 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 SLC26A4O43511 780 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 TYRP1P17643 537 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 HTR1BP28222 390 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 FNTBP49356 437 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 SARSP49591 514 aaKnown RBP5.72□□□□□ -1.49
VPS13A-212ENST00000493341 CEBPAP49715 358 aaPredicted RBP5.72□□□□□ -1.49
VPS13A-212ENST00000493341 LGALS4P56470 323 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 DUSP4Q13115 394 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 BTBD8Q5XKL5 378 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 STEAP3Q658P3 488 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 THAP5Q7Z6K1 395 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 CCT6BQ92526 530 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 RAX2Q96IS3 184 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 TUBGCP5Q96RT8 1024 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 MAP3K20Q9NYL2 800 aaKnown RBP5.72□□□□□ -1.49
VPS13A-212ENST00000493341 FBXO9Q9UK97 447 aaPredicted RBP5.72□□□□□ -1.49
VPS13A-212ENST00000493341 NUB1Q9Y5A7 615 aa5.72□□□□□ -1.49
VPS13A-212ENST00000493341 A0A1W2PQ27 194 aa5.71□□□□□ -1.5
VPS13A-212ENST00000493341 A0A1W2PQ64 194 aa5.71□□□□□ -1.5
VPS13A-212ENST00000493341 A0A1W2PQC6 194 aa5.71□□□□□ -1.5
VPS13A-212ENST00000493341 A0A1W2PQD8 194 aa5.71□□□□□ -1.5
VPS13A-212ENST00000493341 MAFKO60675 156 aa5.71□□□□□ -1.5
VPS13A-212ENST00000493341 PRIM2P49643 509 aa5.71□□□□□ -1.5
VPS13A-212ENST00000493341 BCAR1P56945 870 aa5.71□□□□□ -1.5
VPS13A-212ENST00000493341 TUSC3Q13454 348 aa5.71□□□□□ -1.5
VPS13A-212ENST00000493341 MUM1Q2TAK8 710 aa5.71□□□□□ -1.5
VPS13A-212ENST00000493341 TUBB8Q3ZCM7 444 aa5.71□□□□□ -1.5
VPS13A-212ENST00000493341 ANO6Q4KMQ2 910 aa5.71□□□□□ -1.5
VPS13A-212ENST00000493341 ZBTB41Q5SVQ8 909 aa5.71□□□□□ -1.5
VPS13A-212ENST00000493341 TIGD7Q6NT04 549 aaPredicted RBP5.71□□□□□ -1.5
VPS13A-212ENST00000493341 PNPLA5Q7Z6Z6 429 aaPredicted RBP5.71□□□□□ -1.5
VPS13A-212ENST00000493341 KIAA0319LQ8IZA0 1049 aa5.71□□□□□ -1.5
VPS13A-212ENST00000493341 LZTR1Q8N653 840 aa5.71□□□□□ -1.5
VPS13A-212ENST00000493341 SENP7Q9BQF6 1050 aa5.71□□□□□ -1.5
VPS13A-212ENST00000493341 LRFN3Q9BTN0 628 aa5.71□□□□□ -1.5
VPS13A-212ENST00000493341 MYL10Q9BUA6 226 aa5.71□□□□□ -1.5
VPS13A-212ENST00000493341 ATP13A1Q9HD20 1204 aa5.71□□□□□ -1.5
VPS13A-212ENST00000493341 ARFGAP3Q9NP61 516 aa5.71□□□□□ -1.5
VPS13A-212ENST00000493341 LIMCH1Q9UPQ0 1083 aa5.71□□□□□ -1.5
VPS13A-212ENST00000493341 NTRK1P04629 796 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms