RNA–Protein interactions for RNA: ENST00000491429.1

SCN1A-206, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 542 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-206ENST00000491429 KCNK3O14649 394 aa6.75□□□□□ -1.33
SCN1A-206ENST00000491429 WNT9AO14904 365 aa6.75□□□□□ -1.33
SCN1A-206ENST00000491429 GJA4P35212 333 aa6.75□□□□□ -1.33
SCN1A-206ENST00000491429 JAM2P57087 298 aa6.75□□□□□ -1.33
SCN1A-206ENST00000491429 HHEXQ03014 270 aa6.75□□□□□ -1.33
SCN1A-206ENST00000491429 GNL2Q13823 731 aaKnown RBP6.75□□□□□ -1.33
SCN1A-206ENST00000491429 KANK2Q63ZY3 851 aa6.75□□□□□ -1.33
SCN1A-206ENST00000491429 MTDHQ86UE4 582 aaKnown RBP6.75□□□□□ -1.33
SCN1A-206ENST00000491429 RTKN2Q8IZC4 609 aa6.75□□□□□ -1.33
SCN1A-206ENST00000491429 PCDH19Q8TAB3 1148 aa6.75□□□□□ -1.33
SCN1A-206ENST00000491429 FBXW5Q969U6 566 aa6.75□□□□□ -1.33
SCN1A-206ENST00000491429 BTBD2Q9BX70 525 aa6.75□□□□□ -1.33
SCN1A-206ENST00000491429 UCKL1Q9NWZ5 548 aa6.75□□□□□ -1.33
SCN1A-206ENST00000491429 GIT1Q9Y2X7 761 aa6.75□□□□□ -1.33
SCN1A-206ENST00000491429 PCDHA8Q9Y5H6 950 aa6.75□□□□□ -1.33
SCN1A-206ENST00000491429 A0A0G2JNJ9 132 aa6.74□□□□□ -1.33
SCN1A-206ENST00000491429 KLF4O43474 513 aa6.74□□□□□ -1.33
SCN1A-206ENST00000491429 KRT4P19013 534 aa6.74□□□□□ -1.33
SCN1A-206ENST00000491429 MEOX1P50221 254 aa6.74□□□□□ -1.33
SCN1A-206ENST00000491429 STAT5BP51692 787 aa6.74□□□□□ -1.33
SCN1A-206ENST00000491429 ARID5AQ03989 594 aa6.74□□□□□ -1.33
SCN1A-206ENST00000491429 SEC23AQ15436 765 aa6.74□□□□□ -1.33
SCN1A-206ENST00000491429 TMEM200BQ69YZ2 307 aa6.74□□□□□ -1.33
SCN1A-206ENST00000491429 Q6ZPA2 131 aa6.74□□□□□ -1.33
SCN1A-206ENST00000491429 DPH6Q7L8W6 267 aa6.74□□□□□ -1.33
SCN1A-206ENST00000491429 ADGRE4PQ86SQ3 457 aa6.74□□□□□ -1.33
SCN1A-206ENST00000491429 TMPRSS6Q8IU80 811 aa6.74□□□□□ -1.33
SCN1A-206ENST00000491429 SHCBP1Q8NEM2 672 aa6.74□□□□□ -1.33
SCN1A-206ENST00000491429 Q9UFV3 132 aa6.74□□□□□ -1.33
SCN1A-206ENST00000491429 FAM184BQ9ULE4 1060 aa6.74□□□□□ -1.33
SCN1A-206ENST00000491429 KRTAP23-1A1A580 65 aa6.73□□□□□ -1.33
SCN1A-206ENST00000491429 SLC26A4O43511 780 aa6.73□□□□□ -1.33
SCN1A-206ENST00000491429 ECE1P42892 770 aa6.73□□□□□ -1.33
SCN1A-206ENST00000491429 EP400NLQ6ZTU2 488 aa6.73□□□□□ -1.33
SCN1A-206ENST00000491429 LRRC47Q8N1G4 583 aaKnown RBP6.73□□□□□ -1.33
SCN1A-206ENST00000491429 ST13P5Q8NFI4 369 aaPredicted RBP6.73□□□□□ -1.33
SCN1A-206ENST00000491429 CRAMP1Q96RY5 1269 aa6.73□□□□□ -1.33
SCN1A-206ENST00000491429 TINF2Q9BSI4 451 aa6.73□□□□□ -1.33
SCN1A-206ENST00000491429 ZNF561-AS1K7EIQ3 104 aa6.72□□□□□ -1.33
SCN1A-206ENST00000491429 AQP7O14520 342 aa6.72□□□□□ -1.33
SCN1A-206ENST00000491429 SRGAP2CP0DJJ0 459 aa6.72□□□□□ -1.33
SCN1A-206ENST00000491429 HERVK_113P62684 666 aa6.72□□□□□ -1.33
SCN1A-206ENST00000491429 MOGSQ13724 837 aa6.72□□□□□ -1.33
SCN1A-206ENST00000491429 RRP1BQ14684 758 aaKnown RBP6.72□□□□□ -1.33
SCN1A-206ENST00000491429 THEMISQ8N1K5 641 aaPredicted RBP6.72□□□□□ -1.33
SCN1A-206ENST00000491429 OR10A5Q9H207 317 aa6.72□□□□□ -1.33
SCN1A-206ENST00000491429 SMURF1Q9HCE7 757 aa6.72□□□□□ -1.33
SCN1A-206ENST00000491429 PARPBPQ9NWS1 579 aa6.72□□□□□ -1.33
SCN1A-206ENST00000491429 PCSK5Q92824 1860 aa6.71□□□□□ -1.34
SCN1A-206ENST00000491429 ARVCFO00192 962 aa6.71□□□□□ -1.34
SCN1A-206ENST00000491429 PPFIA2O75334 1257 aa6.71□□□□□ -1.34
SCN1A-206ENST00000491429 MMEP08473 750 aa6.71□□□□□ -1.34
SCN1A-206ENST00000491429 CRHR2Q13324 411 aa6.71□□□□□ -1.34
SCN1A-206ENST00000491429 C16orf59Q7L2K0 433 aa6.71□□□□□ -1.34
SCN1A-206ENST00000491429 MAMDC2Q7Z304 686 aaPredicted RBP6.71□□□□□ -1.34
SCN1A-206ENST00000491429 SH3BP1Q9Y3L3 701 aa6.71□□□□□ -1.34
SCN1A-206ENST00000491429 RAMP2O60895 175 aa6.7□□□□□ -1.34
SCN1A-206ENST00000491429 CLASP2O75122 1294 aaKnown RBP6.7□□□□□ -1.34
SCN1A-206ENST00000491429 STAT3P40763 770 aa6.7□□□□□ -1.34
SCN1A-206ENST00000491429 ST5P78524 1137 aa6.7□□□□□ -1.34
SCN1A-206ENST00000491429 SLC25A3Q00325 362 aa6.7□□□□□ -1.34
SCN1A-206ENST00000491429 GUCY1A3Q02108 690 aa6.7□□□□□ -1.34
SCN1A-206ENST00000491429 COL10A1Q03692 680 aa6.7□□□□□ -1.34
SCN1A-206ENST00000491429 RIN1Q13671 783 aa6.7□□□□□ -1.34
SCN1A-206ENST00000491429 SAFB2Q14151 953 aaKnown RBP eCLIP6.7□□□□□ -1.34
SCN1A-206ENST00000491429 CRY1Q16526 586 aa6.7□□□□□ -1.34
SCN1A-206ENST00000491429 TM4SF20Q53R12 229 aa6.7□□□□□ -1.34
SCN1A-206ENST00000491429 ULK2Q8IYT8 1036 aa6.7□□□□□ -1.34
SCN1A-206ENST00000491429 WDR48Q8TAF3 677 aa6.7□□□□□ -1.34
SCN1A-206ENST00000491429 PTPRN2Q92932 1015 aa6.7□□□□□ -1.34
SCN1A-206ENST00000491429 TTPALQ9BTX7 342 aa6.7□□□□□ -1.34
SCN1A-206ENST00000491429 TNFRSF18Q9Y5U5 241 aa6.7□□□□□ -1.34
SCN1A-206ENST00000491429 CCDC66A2RUB6 948 aa6.69□□□□□ -1.34
SCN1A-206ENST00000491429 CYP27B1O15528 508 aa6.69□□□□□ -1.34
SCN1A-206ENST00000491429 C6orf222P0C671 652 aaPredicted RBP6.69□□□□□ -1.34
SCN1A-206ENST00000491429 GRAMD4Q6IC98 578 aa6.69□□□□□ -1.34
SCN1A-206ENST00000491429 FSTL4Q6MZW2 842 aa6.69□□□□□ -1.34
SCN1A-206ENST00000491429 PRRX2Q99811 253 aa6.69□□□□□ -1.34
SCN1A-206ENST00000491429 SPATA9Q9BWV2 254 aa6.69□□□□□ -1.34
SCN1A-206ENST00000491429 CCDC9Q9Y3X0 531 aaKnown RBP6.69□□□□□ -1.34
SCN1A-206ENST00000491429 PMS2P1A4D2B8 440 aa6.68□□□□□ -1.34
SCN1A-206ENST00000491429 ADCY3O60266 1144 aa6.68□□□□□ -1.34
SCN1A-206ENST00000491429 DNM2P50570 870 aa6.68□□□□□ -1.34
SCN1A-206ENST00000491429 SCNN1GP51170 649 aa6.68□□□□□ -1.34
SCN1A-206ENST00000491429 ACAP1Q15027 740 aa6.68□□□□□ -1.34
SCN1A-206ENST00000491429 Q6ZRM9 215 aa6.68□□□□□ -1.34
SCN1A-206ENST00000491429 SPATC1Q76KD6 591 aa6.68□□□□□ -1.34
SCN1A-206ENST00000491429 ASB15Q8WXK1 588 aa6.68□□□□□ -1.34
SCN1A-206ENST00000491429 ZNF428Q96B54 188 aa6.68□□□□□ -1.34
SCN1A-206ENST00000491429 PCDHA9Q9Y5H5 950 aa6.68□□□□□ -1.34
SCN1A-206ENST00000491429 FOXN1O15353 648 aa6.67□□□□□ -1.34
SCN1A-206ENST00000491429 ADAM15Q13444 863 aa6.67□□□□□ -1.34
SCN1A-206ENST00000491429 FAM209AQ5JX71 171 aa6.67□□□□□ -1.34
SCN1A-206ENST00000491429 FOXB2Q5VYV0 432 aa6.67□□□□□ -1.34
SCN1A-206ENST00000491429 DPY19L2P1Q6NXN4 242 aa6.67□□□□□ -1.34
SCN1A-206ENST00000491429 SCUBE1Q8IWY4 988 aa6.67□□□□□ -1.34
SCN1A-206ENST00000491429 RPUSD2Q8IZ73 545 aaKnown RBP6.67□□□□□ -1.34
SCN1A-206ENST00000491429 BCL6BQ8N143 479 aaPredicted RBP6.67□□□□□ -1.34
SCN1A-206ENST00000491429 CISD2Q8N5K1 135 aaKnown RBP6.67□□□□□ -1.34
SCN1A-206ENST00000491429 MPHOSPH9Q99550 1183 aa6.67□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms