RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 LRRC71Q8N4P6 559 aa15.67■□□□□ 0.1
SYNE1-226ENST00000488376 FBXO18Q8NFZ0 1043 aa15.67■□□□□ 0.1
SYNE1-226ENST00000488376 PHOSPHO2Q8TCD6 241 aa15.67■□□□□ 0.1
SYNE1-226ENST00000488376 SEPT8Q92599 483 aa15.67■□□□□ 0.1
SYNE1-226ENST00000488376 FAM20AQ96MK3 541 aa15.67■□□□□ 0.1
SYNE1-226ENST00000488376 IFIH1Q9BYX4 1025 aaKnown RBP15.67■□□□□ 0.1
SYNE1-226ENST00000488376 PRDM12Q9H4Q4 367 aa15.67■□□□□ 0.1
SYNE1-226ENST00000488376 STXBP5LQ9Y2K9 1186 aa15.67■□□□□ 0.1
SYNE1-226ENST00000488376 COL6A3P12111 3177 aa15.67■□□□□ 0.1
SYNE1-226ENST00000488376 EPOPA6NHQ4 379 aa15.66■□□□□ 0.1
SYNE1-226ENST00000488376 VTNP04004 478 aa15.66■□□□□ 0.1
SYNE1-226ENST00000488376 CD52P31358 61 aa15.66■□□□□ 0.1
SYNE1-226ENST00000488376 HMGN5P82970 282 aaKnown RBP15.66■□□□□ 0.1
SYNE1-226ENST00000488376 TMEM266Q2M3C6 531 aa15.66■□□□□ 0.1
SYNE1-226ENST00000488376 PPP2R2DQ66LE6 453 aa15.66■□□□□ 0.1
SYNE1-226ENST00000488376 LINC01465Q8N7H1 131 aa15.66■□□□□ 0.1
SYNE1-226ENST00000488376 TMEM40Q8WWA1 233 aa15.66■□□□□ 0.1
SYNE1-226ENST00000488376 LINC01599Q8WXQ3 324 aa15.66■□□□□ 0.1
SYNE1-226ENST00000488376 CEP89Q96ST8 783 aa15.66■□□□□ 0.1
SYNE1-226ENST00000488376 TMEM60Q9H2L4 133 aa15.66■□□□□ 0.1
SYNE1-226ENST00000488376 CERS4Q9HA82 394 aa15.66■□□□□ 0.1
SYNE1-226ENST00000488376 SLC28A3Q9HAS3 691 aa15.66■□□□□ 0.1
SYNE1-226ENST00000488376 TRPV2Q9Y5S1 764 aa15.66■□□□□ 0.1
SYNE1-226ENST00000488376 CHD7Q9P2D1 2997 aa15.65■□□□□ 0.1
SYNE1-226ENST00000488376 TLL1O43897 1013 aa15.65■□□□□ 0.1
SYNE1-226ENST00000488376 DRP2Q13474 957 aa15.65■□□□□ 0.1
SYNE1-226ENST00000488376 NBR1Q14596 966 aa15.65■□□□□ 0.1
SYNE1-226ENST00000488376 TARBP2Q15633 366 aaKnown RBP15.65■□□□□ 0.1
SYNE1-226ENST00000488376 PLA2G4FQ68DD2 849 aa15.65■□□□□ 0.1
SYNE1-226ENST00000488376 NCAPH2Q6IBW4 605 aa15.65■□□□□ 0.1
SYNE1-226ENST00000488376 MYOCDQ8IZQ8 938 aa15.65■□□□□ 0.1
SYNE1-226ENST00000488376 METTL13Q8N6R0 699 aa15.65■□□□□ 0.1
SYNE1-226ENST00000488376 ZNF579Q8NAF0 562 aaKnown RBP15.65■□□□□ 0.1
SYNE1-226ENST00000488376 FAM184AQ8NB25 1140 aa15.65■□□□□ 0.1
SYNE1-226ENST00000488376 RDM1Q8NG50 284 aa15.65■□□□□ 0.1
SYNE1-226ENST00000488376 TNPO1Q92973 898 aaKnown RBP15.65■□□□□ 0.1
SYNE1-226ENST00000488376 ZNF668Q96K58 619 aaPredicted RBP15.65■□□□□ 0.1
SYNE1-226ENST00000488376 FAM167AQ96KS9 214 aa15.65■□□□□ 0.1
SYNE1-226ENST00000488376 CELF4Q9BZC1 486 aaKnown RBP15.65■□□□□ 0.1
SYNE1-226ENST00000488376 RGL1Q9NZL6 768 aa15.65■□□□□ 0.1
SYNE1-226ENST00000488376 SEPT9Q9UHD8 586 aaPredicted RBP15.65■□□□□ 0.1
SYNE1-226ENST00000488376 GINS2Q9Y248 185 aa15.65■□□□□ 0.1
SYNE1-226ENST00000488376 RFXAPO00287 272 aa15.64■□□□□ 0.09
SYNE1-226ENST00000488376 ZBTB39O15060 712 aa15.64■□□□□ 0.09
SYNE1-226ENST00000488376 TBX3O15119 743 aa15.64■□□□□ 0.09
SYNE1-226ENST00000488376 GJB5O95377 273 aa15.64■□□□□ 0.09
SYNE1-226ENST00000488376 MCM7P33993 719 aa15.64■□□□□ 0.09
SYNE1-226ENST00000488376 TAP1Q03518 808 aa15.64■□□□□ 0.09
SYNE1-226ENST00000488376 ADGRE1Q14246 886 aa15.64■□□□□ 0.09
SYNE1-226ENST00000488376 KIZQ2M2Z5 673 aa15.64■□□□□ 0.09
SYNE1-226ENST00000488376 MTERF2Q49AM1 385 aa15.64■□□□□ 0.09
SYNE1-226ENST00000488376 IER5Q5VY09 327 aa15.64■□□□□ 0.09
SYNE1-226ENST00000488376 TSHZ1Q6ZSZ6 1077 aa15.64■□□□□ 0.09
SYNE1-226ENST00000488376 ANO5Q75V66 913 aa15.64■□□□□ 0.09
SYNE1-226ENST00000488376 RTN4RL1Q86UN2 441 aaPredicted RBP15.64■□□□□ 0.09
SYNE1-226ENST00000488376 MTMR9Q96QG7 549 aa15.64■□□□□ 0.09
SYNE1-226ENST00000488376 NAP1L4Q99733 375 aaKnown RBP15.64■□□□□ 0.09
SYNE1-226ENST00000488376 EYSQ5T1H1 3165 aa15.64■□□□□ 0.09
SYNE1-226ENST00000488376 DDX11L8A8MPP1 907 aa15.63■□□□□ 0.09
SYNE1-226ENST00000488376 NEMFO60524 1076 aa15.63■□□□□ 0.09
SYNE1-226ENST00000488376 GPR32O75388 356 aa15.63■□□□□ 0.09
SYNE1-226ENST00000488376 UPP2O95045 317 aa15.63■□□□□ 0.09
SYNE1-226ENST00000488376 AMHP03971 560 aa15.63■□□□□ 0.09
SYNE1-226ENST00000488376 FOSL2P15408 326 aa15.63■□□□□ 0.09
SYNE1-226ENST00000488376 NPEPPSP55786 919 aa15.63■□□□□ 0.09
SYNE1-226ENST00000488376 PSMC5P62195 406 aa15.63■□□□□ 0.09
SYNE1-226ENST00000488376 CYP4A11Q02928 519 aa15.63■□□□□ 0.09
SYNE1-226ENST00000488376 SAFBQ15424 915 aaKnown RBP eCLIP15.63■□□□□ 0.09
SYNE1-226ENST00000488376 ZNF174Q15697 407 aa15.63■□□□□ 0.09
SYNE1-226ENST00000488376 CALCRLQ16602 461 aa15.63■□□□□ 0.09
SYNE1-226ENST00000488376 XKR3Q5GH77 459 aa15.63■□□□□ 0.09
SYNE1-226ENST00000488376 EFCAB12Q6NXP0 572 aa15.63■□□□□ 0.09
SYNE1-226ENST00000488376 NOSTRINQ8IVI9 506 aa15.63■□□□□ 0.09
SYNE1-226ENST00000488376 DYDC2Q96IM9 177 aa15.63■□□□□ 0.09
SYNE1-226ENST00000488376 OSMRQ99650 979 aa15.63■□□□□ 0.09
SYNE1-226ENST00000488376 ZBED2Q9BTP6 218 aa15.63■□□□□ 0.09
SYNE1-226ENST00000488376 NIFKQ9BYG3 293 aaKnown RBP15.63■□□□□ 0.09
SYNE1-226ENST00000488376 FOXP1Q9H334 677 aaPredicted RBP15.63■□□□□ 0.09
SYNE1-226ENST00000488376 TMX1Q9H3N1 280 aa15.63■□□□□ 0.09
SYNE1-226ENST00000488376 NRBP2Q9NSY0 501 aa15.63■□□□□ 0.09
SYNE1-226ENST00000488376 PADI3Q9ULW8 664 aa15.63■□□□□ 0.09
SYNE1-226ENST00000488376 NOC2LQ9Y3T9 749 aaKnown RBP15.63■□□□□ 0.09
SYNE1-226ENST00000488376 KDM3AQ9Y4C1 1321 aa15.63■□□□□ 0.09
SYNE1-226ENST00000488376 A0A087WWV3 80 aa15.62■□□□□ 0.09
SYNE1-226ENST00000488376 M0QZ92 97 aa15.62■□□□□ 0.09
SYNE1-226ENST00000488376 ENPP3O14638 875 aa15.62■□□□□ 0.09
SYNE1-226ENST00000488376 MARCH6O60337 910 aa15.62■□□□□ 0.09
SYNE1-226ENST00000488376 MGEA5O60502 916 aa15.62■□□□□ 0.09
SYNE1-226ENST00000488376 EFCAB14O75071 495 aa15.62■□□□□ 0.09
SYNE1-226ENST00000488376 GJB2P29033 226 aa15.62■□□□□ 0.09
SYNE1-226ENST00000488376 TXKP42681 527 aa15.62■□□□□ 0.09
SYNE1-226ENST00000488376 CTTNQ14247 550 aaKnown RBP15.62■□□□□ 0.09
SYNE1-226ENST00000488376 NME8Q8N427 588 aa15.62■□□□□ 0.09
SYNE1-226ENST00000488376 APBB2Q92870 758 aa15.62■□□□□ 0.09
SYNE1-226ENST00000488376 LXNQ9BS40 222 aa15.62■□□□□ 0.09
SYNE1-226ENST00000488376 TTC12Q9H892 705 aaPredicted RBP15.62■□□□□ 0.09
SYNE1-226ENST00000488376 SUGCTQ9HAC7 445 aa15.62■□□□□ 0.09
SYNE1-226ENST00000488376 CEP131Q9UPN4 1083 aa15.62■□□□□ 0.09
SYNE1-226ENST00000488376 LINC01553A4QN01 128 aa15.61■□□□□ 0.09
SYNE1-226ENST00000488376 POTEMA6NI47 508 aa15.61■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms