RNA–Protein interactions for RNA: ENST00000486533.1

COL12A1-208, Transcript of collagen type XII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL12A1, Length 1,554 nt, Biotype retained intron, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1-208ENST00000486533 SEPT14Q6ZU15 432 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 CATIPQ7Z7H3 387 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 SLC43A3Q8NBI5 491 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 COPS5Q92905 334 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 PHKBQ93100 1093 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 CCDC51Q96ER9 411 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 BUD13Q9BRD0 619 aaKnown RBP eCLIP10.05□□□□□ -0.8
COL12A1-208ENST00000486533 SEZ6LQ9BYH1 1024 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 MAF1Q9H063 256 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 TRPV6Q9H1D0 765 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 SENP2Q9HC62 589 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 COL20A1Q9P218 1284 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 STXBP5LQ9Y2K9 1186 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 PCDHA1Q9Y5I3 950 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 KIAA1217Q5T5P2 1943 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 PALM3A6NDB9 673 aaPredicted RBP10.05□□□□□ -0.8
COL12A1-208ENST00000486533 EFCAB8A8MWE9 144 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 B4GALT4O60513 344 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 DDAH1O94760 285 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 ARIH2O95376 493 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 ZSCAN20P17040 1043 aaPredicted RBP10.05□□□□□ -0.8
COL12A1-208ENST00000486533 CDC27P30260 824 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 CASQ1P31415 396 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 CHMP4BP1P59074 171 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 TRIM14Q14142 442 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 GRM4Q14833 912 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 ARID5BQ14865 1188 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 STXBP2Q15833 593 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 TEX35Q5T0J7 233 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 TMCO3Q6UWJ1 677 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 SYT10Q6XYQ8 523 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 ZNF654Q8IZM8 581 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 FAM177A1Q8N128 213 aaPredicted RBP10.05□□□□□ -0.8
COL12A1-208ENST00000486533 SLC17A8Q8NDX2 589 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 IWS1Q96ST2 819 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 BAG1Q99933 345 aaPredicted RBP10.05□□□□□ -0.8
COL12A1-208ENST00000486533 TMX1Q9H3N1 280 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 FBXO2Q9UK22 296 aaPredicted RBP10.05□□□□□ -0.8
COL12A1-208ENST00000486533 PCDHA5Q9Y5H7 936 aa10.05□□□□□ -0.8
COL12A1-208ENST00000486533 VCANP13611 3396 aa10.04□□□□□ -0.8
COL12A1-208ENST00000486533 A6NJR5 290 aa10.04□□□□□ -0.8
COL12A1-208ENST00000486533 PPP1R11O60927 126 aaPredicted RBP10.04□□□□□ -0.8
COL12A1-208ENST00000486533 ACRP10323 421 aa10.04□□□□□ -0.8
COL12A1-208ENST00000486533 HOXA13P31271 388 aaPredicted RBP10.04□□□□□ -0.8
COL12A1-208ENST00000486533 TXLNAP40222 546 aa10.04□□□□□ -0.8
COL12A1-208ENST00000486533 TRAPPC10P48553 1259 aa10.04□□□□□ -0.8
COL12A1-208ENST00000486533 HSD17B4P51659 736 aa10.04□□□□□ -0.8
COL12A1-208ENST00000486533 CCL23P55773 120 aa10.04□□□□□ -0.8
COL12A1-208ENST00000486533 TROAPQ12815 778 aa10.04□□□□□ -0.8
COL12A1-208ENST00000486533 MORC3Q14149 939 aa10.04□□□□□ -0.8
COL12A1-208ENST00000486533 LY6KQ17RY6 165 aa10.04□□□□□ -0.8
COL12A1-208ENST00000486533 PSRC1Q6PGN9 363 aaPredicted RBP10.04□□□□□ -0.8
COL12A1-208ENST00000486533 ZNF771Q7L3S4 317 aaPredicted RBP10.04□□□□□ -0.8
COL12A1-208ENST00000486533 PPFIBP1Q86W92 1011 aa10.04□□□□□ -0.8
COL12A1-208ENST00000486533 RAB11FIP4Q86YS3 637 aa10.04□□□□□ -0.8
COL12A1-208ENST00000486533 FANCBQ8NB91 859 aa10.04□□□□□ -0.8
COL12A1-208ENST00000486533 MTMR8Q96EF0 704 aa10.04□□□□□ -0.8
COL12A1-208ENST00000486533 GUCD1Q96NT3 240 aa10.04□□□□□ -0.8
COL12A1-208ENST00000486533 PANX2Q96RD6 677 aa10.04□□□□□ -0.8
COL12A1-208ENST00000486533 PIGSQ96S52 555 aa10.04□□□□□ -0.8
COL12A1-208ENST00000486533 MTG1Q9BT17 334 aaPredicted RBP10.04□□□□□ -0.8
COL12A1-208ENST00000486533 PXMP2Q9NR77 195 aa10.04□□□□□ -0.8
COL12A1-208ENST00000486533 TRMT13Q9NUP7 481 aaKnown RBP10.04□□□□□ -0.8
COL12A1-208ENST00000486533 RMND1Q9NWS8 449 aa10.04□□□□□ -0.8
COL12A1-208ENST00000486533 MAN1B1Q9UKM7 699 aa10.04□□□□□ -0.8
COL12A1-208ENST00000486533 SCN10AQ9Y5Y9 1956 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 UMODL1Q5DID0 1318 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 HSFX4A0A1B0GTS1 333 aaPredicted RBP10.03□□□□□ -0.8
COL12A1-208ENST00000486533 HSFX3A0A1B0GWH4 333 aaPredicted RBP10.03□□□□□ -0.8
COL12A1-208ENST00000486533 OPLAHO14841 1288 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 PRPF3O43395 683 aaKnown RBP10.03□□□□□ -0.8
COL12A1-208ENST00000486533 KPNA6O60684 536 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 PPFIA3O75145 1194 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 GH1P01241 217 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 TUBBP07437 444 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 NR3C2P08235 984 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 CCDC175P0C221 793 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 SUPT20HL2P0C7V6 817 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 TRAF1Q13077 416 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 ELF2Q15723 593 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 NBPF20Q3BBV1 942 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 LONRF3Q496Y0 759 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 TMEM240Q5SV17 173 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 CCDC62Q6P9F0 684 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 ZNF365Q70YC5 407 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 C16orf59Q7L2K0 433 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 ZNF454Q8N9F8 522 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 PPP1R13LQ8WUF5 828 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 AFG1LQ8WV93 481 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 ERCC4Q92889 916 aaPredicted RBP10.03□□□□□ -0.8
COL12A1-208ENST00000486533 GSDMAQ96QA5 445 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 MYL10Q9BUA6 226 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 NOC4LQ9BVI4 516 aaKnown RBP10.03□□□□□ -0.8
COL12A1-208ENST00000486533 RIOX1Q9H6W3 641 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 IL23AQ9NPF7 189 aa10.03□□□□□ -0.8
COL12A1-208ENST00000486533 PNMA6FA0A0J9YX94 578 aa10.02□□□□□ -0.81
COL12A1-208ENST00000486533 BTBD18B2RXH4 712 aa10.02□□□□□ -0.81
COL12A1-208ENST00000486533 AKR1B15C9JRZ8 316 aaPredicted RBP10.02□□□□□ -0.81
COL12A1-208ENST00000486533 GCOM1H8Y6P7 765 aaPredicted RBP10.02□□□□□ -0.81
COL12A1-208ENST00000486533 POLR2DO15514 142 aaKnown RBP10.02□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms