RNA–Protein interactions for RNA: ENST00000485618.1

SF3A1-208, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 593 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-208ENST00000485618 CCT6AP40227 531 aaKnown RBP9.24□□□□□ -0.93
SF3A1-208ENST00000485618 RFC5P40937 340 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 PRKCEQ02156 737 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 CEBPZQ03701 1054 aaKnown RBP9.24□□□□□ -0.93
SF3A1-208ENST00000485618 TBC1D8BQ0IIM8 1120 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 NBR1Q14596 966 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 PLCB4Q15147 1175 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 ODR4Q5SWX8 454 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 TRIM50Q86XT4 487 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 CCDC60Q8IWA6 550 aaPredicted RBP9.24□□□□□ -0.93
SF3A1-208ENST00000485618 TMEM199Q8N511 208 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 IGSF22Q8N9C0 903 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 SNX29Q8TEQ0 813 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 GJA10Q969M2 543 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 CEP170P1Q96L14 293 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 IPO9Q96P70 1041 aaKnown RBP9.24□□□□□ -0.93
SF3A1-208ENST00000485618 MAP7D2Q96T17 732 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 HSD17B14Q9BPX1 270 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 PYM1Q9BRP8 204 aaKnown RBP9.24□□□□□ -0.93
SF3A1-208ENST00000485618 LXNQ9BS40 222 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 TRPV6Q9H1D0 765 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 TTYH1Q9H313 450 aaPredicted RBP9.24□□□□□ -0.93
SF3A1-208ENST00000485618 SEMA6BQ9H3T3 888 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 HIPK3Q9H422 1215 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 SETD4Q9NVD3 440 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 CHMP5Q9NZZ3 219 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 SEPT9Q9UHD8 586 aaPredicted RBP9.24□□□□□ -0.93
SF3A1-208ENST00000485618 KCNG1Q9UIX4 513 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 TUBE1Q9UJT0 475 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 PCDHA2Q9Y5H9 948 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 SRPRBQ9Y5M8 271 aaKnown RBP9.24□□□□□ -0.93
SF3A1-208ENST00000485618 CLIC4Q9Y696 253 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 GRIN2DO15399 1336 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 IGSF9BQ9UPX0 1349 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 VCANP13611 3396 aa9.24□□□□□ -0.93
SF3A1-208ENST00000485618 MYH9P35579 1960 aaKnown RBP9.23□□□□□ -0.93
SF3A1-208ENST00000485618 ARHGEF35A5YM69 484 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 GOLGA6L4A6NEF3 574 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 EML1O00423 815 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 TIMP1P01033 207 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 CD4P01730 458 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 CYP2C9P11712 490 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 KLRC1P26715 233 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 ME1P48163 572 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 NASPP49321 788 aaPredicted RBP9.23□□□□□ -0.93
SF3A1-208ENST00000485618 IGBP1P78318 339 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 FPGSQ05932 587 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 FAAP100Q0VG06 881 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 ZRSR1Q15695 479 aaKnown RBP9.23□□□□□ -0.93
SF3A1-208ENST00000485618 GDF6Q6KF10 455 aaPredicted RBP9.23□□□□□ -0.93
SF3A1-208ENST00000485618 MTHFD1LQ6UB35 978 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 TRMT1LQ7Z2T5 733 aaKnown RBP9.23□□□□□ -0.93
SF3A1-208ENST00000485618 SERINC5Q86VE9 423 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 METTL13Q8N6R0 699 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 ZNF579Q8NAF0 562 aaKnown RBP9.23□□□□□ -0.93
SF3A1-208ENST00000485618 BANK1Q8NDB2 785 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 LMBR1Q8WVP7 490 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 TCP11Q8WWU5 503 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 CCDC34Q96HJ3 373 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 DYDC2Q96IM9 177 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 PCYT2Q99447 389 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 MTIF3Q9H2K0 278 aaKnown RBP9.23□□□□□ -0.93
SF3A1-208ENST00000485618 PRDM6Q9NQX0 595 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 TRMT13Q9NUP7 481 aaKnown RBP9.23□□□□□ -0.93
SF3A1-208ENST00000485618 FAM13BQ9NYF5 915 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 TFIP11Q9UBB9 837 aaKnown RBP9.23□□□□□ -0.93
SF3A1-208ENST00000485618 DBR1Q9UK59 544 aaKnown RBP9.23□□□□□ -0.93
SF3A1-208ENST00000485618 SCN10AQ9Y5Y9 1956 aa9.23□□□□□ -0.93
SF3A1-208ENST00000485618 TMEM265A0A087WTH1 108 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 SMIM35A0A1B0GVV1 85 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 MBLAC1A4D2B0 266 aaPredicted RBP9.22□□□□□ -0.93
SF3A1-208ENST00000485618 POTEMA6NI47 508 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 ASAP2O43150 1006 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 B4GALT4O60513 344 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 CUTAO60888 179 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 DGAT1O75907 488 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 PFKMP08237 780 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 SELPP16109 830 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 ITGB8P26012 769 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 THPOP40225 353 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 POLGP54098 1239 aaPredicted RBP9.22□□□□□ -0.93
SF3A1-208ENST00000485618 EPHB4P54760 987 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 CYP4A11Q02928 519 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 SPIRE1Q08AE8 756 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 PPIGQ13427 754 aaKnown RBP eCLIP9.22□□□□□ -0.93
SF3A1-208ENST00000485618 CTTNQ14247 550 aaKnown RBP9.22□□□□□ -0.93
SF3A1-208ENST00000485618 FOXD4L6Q3SYB3 417 aaPredicted RBP9.22□□□□□ -0.93
SF3A1-208ENST00000485618 MTERF2Q49AM1 385 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 XKR9Q5GH70 373 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 FOXD4L3Q6VB84 417 aaPredicted RBP9.22□□□□□ -0.93
SF3A1-208ENST00000485618 CCDC73Q6ZRK6 1079 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 RPAINQ86UA6 219 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 CABP7Q86V35 215 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 CATSPER3Q86XQ3 398 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 USP38Q8NB14 1042 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 LINC00301Q8NCQ3 95 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 MCPH1Q8NEM0 835 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 SPATA32Q96LK8 384 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 USP28Q96RU2 1077 aa9.22□□□□□ -0.93
SF3A1-208ENST00000485618 LRRC27Q9C0I9 530 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 76.1 ms