RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 ERVK-21P61565 698 aa18.72■□□□□ 0.59
TRIM54-203ENST00000485306 HTRA4P83105 476 aaPredicted RBP18.72■□□□□ 0.59
TRIM54-203ENST00000485306 NONOQ15233 471 aaKnown RBP eCLIP18.72■□□□□ 0.59
TRIM54-203ENST00000485306 Q4G0T1 1027 aa18.72■□□□□ 0.59
TRIM54-203ENST00000485306 KRT25Q7Z3Z0 450 aa18.72■□□□□ 0.59
TRIM54-203ENST00000485306 ZBTB10Q96DT7 871 aa18.72■□□□□ 0.59
TRIM54-203ENST00000485306 C8orf76Q96K31 380 aa18.72■□□□□ 0.59
TRIM54-203ENST00000485306 YME1L1Q96TA2 773 aa18.72■□□□□ 0.59
TRIM54-203ENST00000485306 TEKT3Q9BXF9 490 aa18.72■□□□□ 0.59
TRIM54-203ENST00000485306 CELF4Q9BZC1 486 aaKnown RBP18.72■□□□□ 0.59
TRIM54-203ENST00000485306 GABBR1Q9UBS5 961 aa18.72■□□□□ 0.59
TRIM54-203ENST00000485306 CEP131Q9UPN4 1083 aa18.72■□□□□ 0.59
TRIM54-203ENST00000485306 TRPV2Q9Y5S1 764 aa18.72■□□□□ 0.59
TRIM54-203ENST00000485306 MTCH2Q9Y6C9 303 aa18.72■□□□□ 0.59
TRIM54-203ENST00000485306 CYP3A7-CYP3A51PA0A087WV96 503 aa18.71■□□□□ 0.59
TRIM54-203ENST00000485306 CCDC194A0A1B0GVG4 234 aa18.71■□□□□ 0.59
TRIM54-203ENST00000485306 LINC01553A4QN01 128 aa18.71■□□□□ 0.59
TRIM54-203ENST00000485306 CYP3A7P24462 503 aa18.71■□□□□ 0.59
TRIM54-203ENST00000485306 SFNP31947 248 aa18.71■□□□□ 0.59
TRIM54-203ENST00000485306 LRCH2Q5VUJ6 765 aa18.71■□□□□ 0.59
TRIM54-203ENST00000485306 LARP1BQ659C4 914 aaKnown RBP18.71■□□□□ 0.59
TRIM54-203ENST00000485306 MOXD1Q6UVY6 613 aa18.71■□□□□ 0.59
TRIM54-203ENST00000485306 FAM43BQ6ZT52 329 aaPredicted RBP18.71■□□□□ 0.59
TRIM54-203ENST00000485306 SYMPKQ92797 1274 aaKnown RBP18.71■□□□□ 0.59
TRIM54-203ENST00000485306 SLC5A5Q92911 643 aa18.71■□□□□ 0.59
TRIM54-203ENST00000485306 FAM167AQ96KS9 214 aa18.71■□□□□ 0.59
TRIM54-203ENST00000485306 FTHL17Q9BXU8 183 aa18.71■□□□□ 0.59
TRIM54-203ENST00000485306 DISC1Q9NRI5 854 aa18.71■□□□□ 0.59
TRIM54-203ENST00000485306 NRBP2Q9NSY0 501 aa18.71■□□□□ 0.59
TRIM54-203ENST00000485306 FOXD4L1Q9NU39 408 aa18.71■□□□□ 0.59
TRIM54-203ENST00000485306 LMCD1Q9NZU5 365 aa18.71■□□□□ 0.59
TRIM54-203ENST00000485306 UNC80Q8N2C7 3258 aa18.7■□□□□ 0.58
TRIM54-203ENST00000485306 EPOPA6NHQ4 379 aa18.7■□□□□ 0.58
TRIM54-203ENST00000485306 ENPP3O14638 875 aa18.7■□□□□ 0.58
TRIM54-203ENST00000485306 TDP2O95551 362 aa18.7■□□□□ 0.58
TRIM54-203ENST00000485306 ATP4AP20648 1035 aa18.7■□□□□ 0.58
TRIM54-203ENST00000485306 JAK3P52333 1124 aa18.7■□□□□ 0.58
TRIM54-203ENST00000485306 TMEM62Q0P6H9 643 aa18.7■□□□□ 0.58
TRIM54-203ENST00000485306 GRB10Q13322 594 aa18.7■□□□□ 0.58
TRIM54-203ENST00000485306 INF2Q27J81 1249 aa18.7■□□□□ 0.58
TRIM54-203ENST00000485306 TRMT1LQ7Z2T5 733 aaKnown RBP18.7■□□□□ 0.58
TRIM54-203ENST00000485306 FBXO18Q8NFZ0 1043 aa18.7■□□□□ 0.58
TRIM54-203ENST00000485306 OXER1Q8TDS5 423 aa18.7■□□□□ 0.58
TRIM54-203ENST00000485306 ATXN2LQ8WWM7 1075 aaKnown RBP18.7■□□□□ 0.58
TRIM54-203ENST00000485306 MBOAT7Q96N66 472 aa18.7■□□□□ 0.58
TRIM54-203ENST00000485306 SAMD11Q96NU1 681 aa18.7■□□□□ 0.58
TRIM54-203ENST00000485306 THEGQ9P2T0 379 aa18.7■□□□□ 0.58
TRIM54-203ENST00000485306 MTUS1Q9ULD2 1270 aa18.7■□□□□ 0.58
TRIM54-203ENST00000485306 KDM3AQ9Y4C1 1321 aa18.7■□□□□ 0.58
TRIM54-203ENST00000485306 A0A0C4DFX4 3053 aa18.7■□□□□ 0.58
TRIM54-203ENST00000485306 MAGEB2O15479 319 aa18.69■□□□□ 0.58
TRIM54-203ENST00000485306 CD52P31358 61 aa18.69■□□□□ 0.58
TRIM54-203ENST00000485306 PAK2Q13177 524 aa18.69■□□□□ 0.58
TRIM54-203ENST00000485306 SAFBQ15424 915 aaKnown RBP eCLIP18.69■□□□□ 0.58
TRIM54-203ENST00000485306 SKIV2LQ15477 1246 aaKnown RBP18.69■□□□□ 0.58
TRIM54-203ENST00000485306 ODR4Q5SWX8 454 aa18.69■□□□□ 0.58
TRIM54-203ENST00000485306 SPRYD3Q8NCJ5 442 aa18.69■□□□□ 0.58
TRIM54-203ENST00000485306 RDM1Q8NG50 284 aa18.69■□□□□ 0.58
TRIM54-203ENST00000485306 SP7Q8TDD2 431 aaPredicted RBP18.69■□□□□ 0.58
TRIM54-203ENST00000485306 COL25A1Q9BXS0 654 aaPredicted RBP18.69■□□□□ 0.58
TRIM54-203ENST00000485306 BRMS1Q9HCU9 246 aa18.69■□□□□ 0.58
TRIM54-203ENST00000485306 DDX25Q9UHL0 483 aaKnown RBP18.69■□□□□ 0.58
TRIM54-203ENST00000485306 EYSQ5T1H1 3165 aa18.69■□□□□ 0.58
TRIM54-203ENST00000485306 SIP14410 1827 aa18.69■□□□□ 0.58
TRIM54-203ENST00000485306 EVPLQ92817 2033 aa18.69■□□□□ 0.58
TRIM54-203ENST00000485306 H3BQV1 296 aa18.68■□□□□ 0.58
TRIM54-203ENST00000485306 CHMP2AO43633 222 aa18.68■□□□□ 0.58
TRIM54-203ENST00000485306 KRT2P35908 639 aa18.68■□□□□ 0.58
TRIM54-203ENST00000485306 FOSBP53539 338 aa18.68■□□□□ 0.58
TRIM54-203ENST00000485306 LETM2Q2VYF4 491 aa18.68■□□□□ 0.58
TRIM54-203ENST00000485306 TJAP1Q5JTD0 557 aa18.68■□□□□ 0.58
TRIM54-203ENST00000485306 KRT40Q6A162 431 aa18.68■□□□□ 0.58
TRIM54-203ENST00000485306 PIK3AP1Q6ZUJ8 805 aa18.68■□□□□ 0.58
TRIM54-203ENST00000485306 MIER3Q7Z3K6 550 aa18.68■□□□□ 0.58
TRIM54-203ENST00000485306 SPRED2Q7Z698 418 aa18.68■□□□□ 0.58
TRIM54-203ENST00000485306 KIAA0319LQ8IZA0 1049 aa18.68■□□□□ 0.58
TRIM54-203ENST00000485306 METTL13Q8N6R0 699 aa18.68■□□□□ 0.58
TRIM54-203ENST00000485306 FBXO22Q8NEZ5 403 aa18.68■□□□□ 0.58
TRIM54-203ENST00000485306 NAP1L4Q99733 375 aaKnown RBP18.68■□□□□ 0.58
TRIM54-203ENST00000485306 AGO3Q9H9G7 860 aaKnown RBP18.68■□□□□ 0.58
TRIM54-203ENST00000485306 SUGCTQ9HAC7 445 aa18.68■□□□□ 0.58
TRIM54-203ENST00000485306 PRDM6Q9NQX0 595 aa18.68■□□□□ 0.58
TRIM54-203ENST00000485306 PADI3Q9ULW8 664 aa18.68■□□□□ 0.58
TRIM54-203ENST00000485306 GINS2Q9Y248 185 aa18.68■□□□□ 0.58
TRIM54-203ENST00000485306 LOXHD1Q8IVV2 1947 aa18.68■□□□□ 0.58
TRIM54-203ENST00000485306 IGSF9BQ9UPX0 1349 aa18.68■□□□□ 0.58
TRIM54-203ENST00000485306 CHD7Q9P2D1 2997 aa18.68■□□□□ 0.58
TRIM54-203ENST00000485306 PRRC2BQ5JSZ5 2229 aaKnown RBP18.68■□□□□ 0.58
TRIM54-203ENST00000485306 WDR81Q562E7 1941 aa18.67■□□□□ 0.58
TRIM54-203ENST00000485306 ZBTB42B2RXF5 422 aa18.67■□□□□ 0.58
TRIM54-203ENST00000485306 RBAK-RBAKDNI3L0D1 243 aa18.67■□□□□ 0.58
TRIM54-203ENST00000485306 PSMD10O75832 226 aa18.67■□□□□ 0.58
TRIM54-203ENST00000485306 MMP1P03956 469 aa18.67■□□□□ 0.58
TRIM54-203ENST00000485306 SYT1P21579 422 aa18.67■□□□□ 0.58
TRIM54-203ENST00000485306 TMOD1P28289 359 aa18.67■□□□□ 0.58
TRIM54-203ENST00000485306 MRPS5P82675 430 aaKnown RBP18.67■□□□□ 0.58
TRIM54-203ENST00000485306 NR5A1Q13285 461 aa18.67■□□□□ 0.58
TRIM54-203ENST00000485306 EARS2Q5JPH6 523 aaKnown RBP18.67■□□□□ 0.58
TRIM54-203ENST00000485306 NEK8Q86SG6 692 aa18.67■□□□□ 0.58
TRIM54-203ENST00000485306 FIBCD1Q8N539 461 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms