RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 USP17L17D6RBQ6 530 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 USP17L19D6RCP7 530 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 USP17L20D6RJB6 530 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 SPAG7O75391 227 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 ECEL1O95672 775 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 EIF3BP55884 814 aaKnown RBP14.61□□□□□ -0.07
USP42-206ENST00000479544 USP17L24Q0WX57 530 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 ALX1Q15699 326 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 LONRF1Q17RB8 773 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 DCUN1D2Q6PH85 259 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 USP17L6PQ6QN14 398 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 SMIM5Q71RC9 77 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 GIMAP8Q8ND71 665 aaPredicted RBP14.61□□□□□ -0.07
USP42-206ENST00000479544 DNAJC7Q99615 494 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 TMEM47Q9BQJ4 181 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 DCP1AQ9NPI6 582 aaPredicted RBP14.61□□□□□ -0.07
USP42-206ENST00000479544 TMOD2Q9NZR1 351 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 ZBTB12Q9Y330 459 aaPredicted RBP14.61□□□□□ -0.07
USP42-206ENST00000479544 hCG_2014768A0A024R1R8 64 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 A0A0G2JND7 137 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 FERP16591 822 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 IL6STP40189 918 aaPredicted RBP14.61□□□□□ -0.07
USP42-206ENST00000479544 CRKLP46109 303 aaKnown RBP14.61□□□□□ -0.07
USP42-206ENST00000479544 SCTRP47872 440 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 COASYQ13057 564 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 CDC37Q16543 378 aaPredicted RBP14.61□□□□□ -0.07
USP42-206ENST00000479544 TEX2Q8IWB9 1127 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 DTX3LQ8TDB6 740 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 RUNDC3BQ96NL0 473 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 MAGEF1Q9HAY2 307 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 ALG13Q9NP73 1137 aaKnown RBP14.61□□□□□ -0.07
USP42-206ENST00000479544 STK17AQ9UEE5 414 aa14.61□□□□□ -0.07
USP42-206ENST00000479544 TTC7AQ9ULT0 858 aaPredicted RBP14.61□□□□□ -0.07
USP42-206ENST00000479544 LAD1O00515 517 aa14.6□□□□□ -0.07
USP42-206ENST00000479544 STAT3P40763 770 aa14.6□□□□□ -0.07
USP42-206ENST00000479544 SCNN1DP51172 638 aa14.6□□□□□ -0.07
USP42-206ENST00000479544 PDS5AQ29RF7 1337 aaKnown RBP14.6□□□□□ -0.07
USP42-206ENST00000479544 WDR66Q8TBY9 1149 aa14.6□□□□□ -0.07
USP42-206ENST00000479544 STAMBPL1Q96FJ0 436 aa14.6□□□□□ -0.07
USP42-206ENST00000479544 ZC3H12CQ9C0D7 883 aaKnown RBP14.6□□□□□ -0.07
USP42-206ENST00000479544 LOC102724428A0A0B4J2F2 783 aa14.6□□□□□ -0.07
USP42-206ENST00000479544 RHOBTB3O94955 611 aa14.6□□□□□ -0.07
USP42-206ENST00000479544 BTDP43251 543 aa14.6□□□□□ -0.07
USP42-206ENST00000479544 SMTNP53814 917 aa14.6□□□□□ -0.07
USP42-206ENST00000479544 SIK1P57059 783 aa14.6□□□□□ -0.07
USP42-206ENST00000479544 CREG2Q8IUH2 290 aa14.6□□□□□ -0.07
USP42-206ENST00000479544 LRRC34Q8IZ02 419 aa14.6□□□□□ -0.07
USP42-206ENST00000479544 SPICE1Q8N0Z3 855 aa14.6□□□□□ -0.07
USP42-206ENST00000479544 KAT2BQ92831 832 aa14.6□□□□□ -0.07
USP42-206ENST00000479544 KIF9Q9HAQ2 790 aa14.6□□□□□ -0.07
USP42-206ENST00000479544 ANAPC5Q9UJX4 755 aa14.6□□□□□ -0.07
USP42-206ENST00000479544 OPLAHO14841 1288 aa14.6□□□□□ -0.07
USP42-206ENST00000479544 PPP2R5EQ16537 467 aa14.6□□□□□ -0.07
USP42-206ENST00000479544 SLC18A3Q16572 532 aa14.6□□□□□ -0.07
USP42-206ENST00000479544 C1orf54Q8WWF1 131 aa14.6□□□□□ -0.07
USP42-206ENST00000479544 HAUS1Q96CS2 278 aa14.6□□□□□ -0.07
USP42-206ENST00000479544 POTEFA5A3E0 1075 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 SORBS3O60504 671 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 POTEIP0CG38 1075 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 TRIM49P0CI25 452 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 TRIM49CP0CI26 452 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 LMNB1P20700 586 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 SLC29A2Q14542 456 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 GALNT17Q6IS24 598 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 POTEGQ6S5H5 508 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 POTEEQ6S8J3 1075 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 SDCCAG8Q86SQ7 713 aaPredicted RBP14.59□□□□□ -0.07
USP42-206ENST00000479544 CPXCR1Q8N123 301 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 MIPOL1Q8TD10 442 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 ANKS1AQ92625 1134 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 FNBP1Q96RU3 617 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 FAM118BQ9BPY3 351 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 METTL14Q9HCE5 456 aaKnown RBP14.59□□□□□ -0.07
USP42-206ENST00000479544 DNAJC12Q9UKB3 198 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 SETD1AO15047 1707 aaKnown RBP14.59□□□□□ -0.07
USP42-206ENST00000479544 WNT7AO00755 349 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 GCFC2P16383 781 aaKnown RBP14.59□□□□□ -0.07
USP42-206ENST00000479544 GTF2IP78347 998 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 BSPRYQ5W0U4 402 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 SFR1Q86XK3 245 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 CLEC10AQ8IUN9 316 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 DYDC2Q96IM9 177 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 EXOC1LA0A1B0GW35 172 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 CCT8L1PA6NM43 557 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 RASA4BC9J798 803 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 IGF2BP3O00425 579 aaKnown RBP eCLIP14.59□□□□□ -0.07
USP42-206ENST00000479544 RASA4O43374 803 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 ITGA4P13612 1032 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 POLD1P28340 1107 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 PPP2R5DQ14738 602 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 TTI2Q6NXR4 508 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 GJB7Q6PEY0 223 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 KDM7AQ6ZMT4 941 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 GUF1Q8N442 669 aaKnown RBP14.59□□□□□ -0.07
USP42-206ENST00000479544 USP38Q8NB14 1042 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 KIFAP3Q92845 792 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 NUDCD1Q96RS6 583 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 IRAK4Q9NWZ3 460 aa14.59□□□□□ -0.07
USP42-206ENST00000479544 DDX20Q9UHI6 824 aaKnown RBP14.59□□□□□ -0.07
USP42-206ENST00000479544 REXO2Q9Y3B8 237 aaKnown RBP14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms