RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, human

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-212	ENST00000477520	PDE6B	P35913	854 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	MTHFS	P49914	203 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	SH3BGR	P55822	239 aa	Predicted RBP	5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	EVA1C	P58658	441 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	EXOSC9	Q06265	439 aa	Known RBP	5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	PPFIA1	Q13136	1202 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	TMED1	Q13445	227 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	PDIA5	Q14554	519 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	RRS1	Q15050	365 aa	Known RBP	5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	IQCB1	Q15051	598 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	ANKRD1	Q15327	319 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	NR0B2	Q15466	257 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	ENOX2	Q16206	610 aa	Known RBP	5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	SLC5A9	Q2M3M2	681 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	BEND6	Q5SZJ8	279 aa	Predicted RBP	5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	E4F1	Q66K89	784 aa	Predicted RBP	5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	ISM2	Q6H9L7	571 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	WDR93	Q6P2C0	686 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	EP400NL	Q6ZTU2	488 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	SRGAP1	Q7Z6B7	1085 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	IQCA1	Q86XH1	822 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	OXR1	Q8N573	874 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	ANKRD44	Q8N8A2	993 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	DRAXIN	Q8NBI3	349 aa	Predicted RBP	5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	FEZF2	Q8TBJ5	459 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	MIPOL1	Q8TD10	442 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	ZNF483	Q8TF39	744 aa	Predicted RBP	5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	SHISA4	Q96DD7	197 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	RPGRIP1	Q96KN7	1286 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	BAG1	Q99933	345 aa	Predicted RBP	5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	PARD6B	Q9BYG5	372 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	OSBPL7	Q9BZF2	842 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	PPM1H	Q9ULR3	514 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	CNPY2	Q9Y2B0	182 aa		5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	PHRF1	Q9P1Y6	1649 aa	Known RBP	5.3	□□□□□ -1.56
PTCD3-212	ENST00000477520	SOS1	Q07889	1333 aa	Predicted RBP	5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	NFAT5	O94916	1531 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	ABCC6	O95255	1503 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	MARF1	Q9Y4F3	1742 aa	Known RBP	5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	AK9	Q5TCS8	1911 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	CDK12	Q9NYV4	1490 aa	Predicted RBP	5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	FAM83G	A6ND36	823 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	PDLIM1	O00151	329 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	ABLIM1	O14639	778 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	PSPN	O60542	156 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	DIAPH1	O60610	1272 aa	Known RBP	5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	KIN	O60870	393 aa	Known RBP	5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	RTN2	O75298	545 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	EFEMP2	O95967	443 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	CELA3B	P08861	270 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	IMPDH2	P12268	514 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	CHML	P26374	656 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	HOXC9	P31274	260 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	HSPA4	P34932	840 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	G3BP1	Q13283	466 aa	Known RBP eCLIP	5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	DSC3	Q14574	896 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	CHRNA2	Q15822	529 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	KIAA0753	Q2KHM9	967 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	TMEM151B	Q8IW70	566 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	CNNM3	Q8NE01	707 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	DNAJB8	Q8NHS0	232 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	N4BP2L2	Q92802	583 aa	Predicted RBP	5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	DACT3	Q96B18	629 aa	Predicted RBP	5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	CARD6	Q9BX69	1037 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	ALDH8A1	Q9H2A2	487 aa	Predicted RBP	5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	TMPRSS5	Q9H3S3	457 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	MYO1A	Q9UBC5	1043 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	TJP2	Q9UDY2	1190 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	NRBP1	Q9UHY1	535 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	EXOC6B	Q9Y2D4	811 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	PCDHA11	Q9Y5I1	949 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	MRFAP1	Q9Y605	127 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	SNCAIP	Q9Y6H5	919 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	FAM169A	Q9Y6X4	670 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	LTN1	O94822	1766 aa		5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	COL14A1	Q05707	1796 aa	Known RBP	5.29	□□□□□ -1.56
PTCD3-212	ENST00000477520	ABCA3	Q99758	1704 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	CRYBG1	Q9Y4K1	1723 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	GOLGA8K	D6RF30	607 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	RFXAP	O00287	272 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	EXOC5	O00471	708 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	IKBKB	O14920	756 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	MEFV	O15553	781 aa	Predicted RBP	5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	FIBP	O43427	364 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	AHCYL1	O43865	530 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	SMARCA5	O60264	1052 aa	Predicted RBP	5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	OPA1	O60313	960 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	STX10	O60499	249 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	CDKL5	O76039	1030 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	LUC7L3	O95232	432 aa	Known RBP	5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	ADRB1	P08588	477 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	MYBL2	P10244	700 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	FBLN1	P23142	703 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	TMPO	P42166	694 aa	Known RBP	5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	CD151	P48509	253 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	RPS6KA3	P51812	740 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	GNAI1	P63096	354 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	APBA1	Q02410	837 aa		5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	GNL2	Q13823	731 aa	Known RBP	5.28	□□□□□ -1.56
PTCD3-212	ENST00000477520	CDC37	Q16543	378 aa	Predicted RBP	5.28	□□□□□ -1.56

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