RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 PCDHA10Q9Y5I2 948 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 SQORQ9Y6N5 450 aa15.98■□□□□ 0.15
UPF3A-204ENST00000475218 BRWD1Q9NSI6 2320 aa15.97■□□□□ 0.15
UPF3A-204ENST00000475218 PSMD10O75832 226 aa15.97■□□□□ 0.15
UPF3A-204ENST00000475218 Q4G0T1 1027 aa15.97■□□□□ 0.15
UPF3A-204ENST00000475218 ZNF484Q5JVG2 852 aa15.97■□□□□ 0.15
UPF3A-204ENST00000475218 LINC01465Q8N7H1 131 aa15.97■□□□□ 0.15
UPF3A-204ENST00000475218 ZNF689Q96CS4 500 aaPredicted RBP15.97■□□□□ 0.15
UPF3A-204ENST00000475218 RIT2Q99578 217 aa15.97■□□□□ 0.15
UPF3A-204ENST00000475218 UNC45AQ9H3U1 944 aa15.97■□□□□ 0.15
UPF3A-204ENST00000475218 RPLP2P05387 115 aaKnown RBP15.96■□□□□ 0.15
UPF3A-204ENST00000475218 PSAPP07602 524 aa15.96■□□□□ 0.15
UPF3A-204ENST00000475218 FDPSP14324 419 aaKnown RBP15.96■□□□□ 0.15
UPF3A-204ENST00000475218 MRPS5P82675 430 aaKnown RBP15.96■□□□□ 0.15
UPF3A-204ENST00000475218 TMEM266Q2M3C6 531 aa15.96■□□□□ 0.15
UPF3A-204ENST00000475218 TRMT1LQ7Z2T5 733 aaKnown RBP15.96■□□□□ 0.15
UPF3A-204ENST00000475218 NME8Q8N427 588 aa15.96■□□□□ 0.15
UPF3A-204ENST00000475218 FBXO22Q8NEZ5 403 aa15.96■□□□□ 0.15
UPF3A-204ENST00000475218 ETNPPLQ8TBG4 499 aa15.96■□□□□ 0.15
UPF3A-204ENST00000475218 OXER1Q8TDS5 423 aa15.96■□□□□ 0.15
UPF3A-204ENST00000475218 BBXQ8WY36 941 aaPredicted RBP15.96■□□□□ 0.15
UPF3A-204ENST00000475218 TNPO1Q92973 898 aaKnown RBP15.96■□□□□ 0.15
UPF3A-204ENST00000475218 ERVK-5Q9HDB9 667 aa15.96■□□□□ 0.15
UPF3A-204ENST00000475218 LMCD1Q9NZU5 365 aa15.96■□□□□ 0.15
UPF3A-204ENST00000475218 STK36Q9NRP7 1315 aa15.96■□□□□ 0.15
UPF3A-204ENST00000475218 TCF20Q9UGU0 1960 aaKnown RBP15.96■□□□□ 0.14
UPF3A-204ENST00000475218 WDR64B1ANS9 1081 aa15.95■□□□□ 0.14
UPF3A-204ENST00000475218 MGEA5O60502 916 aa15.95■□□□□ 0.14
UPF3A-204ENST00000475218 STBD1O95210 358 aa15.95■□□□□ 0.14
UPF3A-204ENST00000475218 BMP1P13497 986 aa15.95■□□□□ 0.14
UPF3A-204ENST00000475218 KCNQ1P51787 676 aa15.95■□□□□ 0.14
UPF3A-204ENST00000475218 FAM177A1Q8N128 213 aaPredicted RBP15.95■□□□□ 0.14
UPF3A-204ENST00000475218 NECAB1Q8N987 351 aa15.95■□□□□ 0.14
UPF3A-204ENST00000475218 SLKQ9H2G2 1235 aaPredicted RBP15.95■□□□□ 0.14
UPF3A-204ENST00000475218 DISC1Q9NRI5 854 aa15.95■□□□□ 0.14
UPF3A-204ENST00000475218 NOC2LQ9Y3T9 749 aaKnown RBP15.95■□□□□ 0.14
UPF3A-204ENST00000475218 KIAA1671Q9BY89 1806 aa15.95■□□□□ 0.14
UPF3A-204ENST00000475218 SLC37A4O43826 429 aa15.95■□□□□ 0.14
UPF3A-204ENST00000475218 GPR32O75388 356 aa15.95■□□□□ 0.14
UPF3A-204ENST00000475218 ST3GAL1Q11201 340 aa15.95■□□□□ 0.14
UPF3A-204ENST00000475218 ME3Q16798 604 aa15.95■□□□□ 0.14
UPF3A-204ENST00000475218 EARS2Q5JPH6 523 aaKnown RBP15.95■□□□□ 0.14
UPF3A-204ENST00000475218 LRCH2Q5VUJ6 765 aa15.95■□□□□ 0.14
UPF3A-204ENST00000475218 GALNT17Q6IS24 598 aa15.95■□□□□ 0.14
UPF3A-204ENST00000475218 TMEM192Q8IY95 271 aa15.95■□□□□ 0.14
UPF3A-204ENST00000475218 CKAP2LQ8IYA6 745 aa15.95■□□□□ 0.14
UPF3A-204ENST00000475218 TSPYL2Q9H2G4 693 aaPredicted RBP15.95■□□□□ 0.14
UPF3A-204ENST00000475218 ADGRA3Q8IWK6 1321 aa15.95■□□□□ 0.14
UPF3A-204ENST00000475218 CHMP2AO43633 222 aa15.94■□□□□ 0.14
UPF3A-204ENST00000475218 GAS7O60861 476 aa15.94■□□□□ 0.14
UPF3A-204ENST00000475218 DGKIO75912 1065 aa15.94■□□□□ 0.14
UPF3A-204ENST00000475218 SKIV2LQ15477 1246 aaKnown RBP15.94■□□□□ 0.14
UPF3A-204ENST00000475218 INF2Q27J81 1249 aa15.94■□□□□ 0.14
UPF3A-204ENST00000475218 CPLX2Q6PUV4 134 aaKnown RBP15.94■□□□□ 0.14
UPF3A-204ENST00000475218 SYMPKQ92797 1274 aaKnown RBP15.94■□□□□ 0.14
UPF3A-204ENST00000475218 CEP89Q96ST8 783 aa15.94■□□□□ 0.14
UPF3A-204ENST00000475218 PPP1R16BQ96T49 567 aa15.94■□□□□ 0.14
UPF3A-204ENST00000475218 SAMM50Q9Y512 469 aa15.94■□□□□ 0.14
UPF3A-204ENST00000475218 FAM205CA6NFA0 338 aa15.93■□□□□ 0.14
UPF3A-204ENST00000475218 H3BNC9 293 aa15.93■□□□□ 0.14
UPF3A-204ENST00000475218 VTNP04004 478 aa15.93■□□□□ 0.14
UPF3A-204ENST00000475218 OATP04181 439 aa15.93■□□□□ 0.14
UPF3A-204ENST00000475218 CLCN3P51790 818 aa15.93■□□□□ 0.14
UPF3A-204ENST00000475218 PRKCEQ02156 737 aa15.93■□□□□ 0.14
UPF3A-204ENST00000475218 PAK2Q13177 524 aa15.93■□□□□ 0.14
UPF3A-204ENST00000475218 NONOQ15233 471 aaKnown RBP eCLIP15.93■□□□□ 0.14
UPF3A-204ENST00000475218 TARBP2Q15633 366 aaKnown RBP15.93■□□□□ 0.14
UPF3A-204ENST00000475218 KIZQ2M2Z5 673 aa15.93■□□□□ 0.14
UPF3A-204ENST00000475218 MOXD1Q6UVY6 613 aa15.93■□□□□ 0.14
UPF3A-204ENST00000475218 ADAMTS19Q8TE59 1207 aa15.93■□□□□ 0.14
UPF3A-204ENST00000475218 CLP1Q92989 425 aaKnown RBP15.93■□□□□ 0.14
UPF3A-204ENST00000475218 NECAB3Q96P71 396 aaPredicted RBP15.93■□□□□ 0.14
UPF3A-204ENST00000475218 C22orf23Q9BZE7 217 aa15.93■□□□□ 0.14
UPF3A-204ENST00000475218 TMEM150BA6NC51 233 aa15.92■□□□□ 0.14
UPF3A-204ENST00000475218 M0QZ92 97 aa15.92■□□□□ 0.14
UPF3A-204ENST00000475218 GATMP50440 423 aa15.92■□□□□ 0.14
UPF3A-204ENST00000475218 KRT25Q7Z3Z0 450 aa15.92■□□□□ 0.14
UPF3A-204ENST00000475218 FAM228AQ86W67 206 aa15.92■□□□□ 0.14
UPF3A-204ENST00000475218 TNFRSF25Q93038 417 aa15.92■□□□□ 0.14
UPF3A-204ENST00000475218 GTF3C6Q969F1 213 aa15.92■□□□□ 0.14
UPF3A-204ENST00000475218 MRPL38Q96DV4 380 aaKnown RBP15.92■□□□□ 0.14
UPF3A-204ENST00000475218 SAMD11Q96NU1 681 aa15.92■□□□□ 0.14
UPF3A-204ENST00000475218 TEKT3Q9BXF9 490 aa15.92■□□□□ 0.14
UPF3A-204ENST00000475218 GINS2Q9Y248 185 aa15.92■□□□□ 0.14
UPF3A-204ENST00000475218 MYO7AQ13402 2215 aa15.92■□□□□ 0.14
UPF3A-204ENST00000475218 C5orf67F2Z3F1 127 aa15.92■□□□□ 0.14
UPF3A-204ENST00000475218 CDKL5O76039 1030 aa15.92■□□□□ 0.14
UPF3A-204ENST00000475218 LRRC71Q8N4P6 559 aa15.92■□□□□ 0.14
UPF3A-204ENST00000475218 FIBCD1Q8N539 461 aa15.92■□□□□ 0.14
UPF3A-204ENST00000475218 OSMRQ99650 979 aa15.92■□□□□ 0.14
UPF3A-204ENST00000475218 FTHL17Q9BXU8 183 aa15.92■□□□□ 0.14
UPF3A-204ENST00000475218 ADAMTS10Q9H324 1103 aa15.92■□□□□ 0.14
UPF3A-204ENST00000475218 KCNMB3Q9NPA1 279 aa15.92■□□□□ 0.14
UPF3A-204ENST00000475218 ORC3Q9UBD5 711 aaPredicted RBP15.92■□□□□ 0.14
UPF3A-204ENST00000475218 VAV3Q9UKW4 847 aa15.92■□□□□ 0.14
UPF3A-204ENST00000475218 NCOR1O75376 2440 aa15.91■□□□□ 0.14
UPF3A-204ENST00000475218 C5orf42Q9H799 3197 aa15.91■□□□□ 0.14
UPF3A-204ENST00000475218 EML1O00423 815 aa15.91■□□□□ 0.14
UPF3A-204ENST00000475218 SFNP31947 248 aa15.91■□□□□ 0.14
UPF3A-204ENST00000475218 JAK3P52333 1124 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms