RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 KRT2P35908 639 aa20.24■□□□□ 0.83
UPF3A-203ENST00000474056 PRKCEQ02156 737 aa20.24■□□□□ 0.83
UPF3A-203ENST00000474056 B3GNT9Q6UX72 402 aa20.24■□□□□ 0.83
UPF3A-203ENST00000474056 MIER3Q7Z3K6 550 aa20.24■□□□□ 0.83
UPF3A-203ENST00000474056 CCDC83Q8IWF9 413 aa20.24■□□□□ 0.83
UPF3A-203ENST00000474056 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.24■□□□□ 0.83
UPF3A-203ENST00000474056 ARNTL2Q8WYA1 636 aa20.24■□□□□ 0.83
UPF3A-203ENST00000474056 TNFRSF25Q93038 417 aa20.24■□□□□ 0.83
UPF3A-203ENST00000474056 TOP1MTQ969P6 601 aa20.24■□□□□ 0.83
UPF3A-203ENST00000474056 LIMCH1Q9UPQ0 1083 aa20.24■□□□□ 0.83
UPF3A-203ENST00000474056 UPP2O95045 317 aa20.23■□□□□ 0.83
UPF3A-203ENST00000474056 OATP04181 439 aa20.23■□□□□ 0.83
UPF3A-203ENST00000474056 CD52P31358 61 aa20.23■□□□□ 0.83
UPF3A-203ENST00000474056 HTRA4P83105 476 aaPredicted RBP20.23■□□□□ 0.83
UPF3A-203ENST00000474056 KIAA0319LQ8IZA0 1049 aa20.23■□□□□ 0.83
UPF3A-203ENST00000474056 NME8Q8N427 588 aa20.23■□□□□ 0.83
UPF3A-203ENST00000474056 PPM1EQ8WY54 764 aa20.23■□□□□ 0.83
UPF3A-203ENST00000474056 FAM167AQ96KS9 214 aa20.23■□□□□ 0.83
UPF3A-203ENST00000474056 CELF4Q9BZC1 486 aaKnown RBP20.23■□□□□ 0.83
UPF3A-203ENST00000474056 INSL6Q9Y581 213 aa20.23■□□□□ 0.83
UPF3A-203ENST00000474056 KDM3AQ9Y4C1 1321 aa20.23■□□□□ 0.83
UPF3A-203ENST00000474056 LINC01553A4QN01 128 aa20.22■□□□□ 0.83
UPF3A-203ENST00000474056 CCNT1O60563 726 aaKnown RBP20.22■□□□□ 0.83
UPF3A-203ENST00000474056 MMP1P03956 469 aa20.22■□□□□ 0.83
UPF3A-203ENST00000474056 GCFC2P16383 781 aaKnown RBP20.22■□□□□ 0.83
UPF3A-203ENST00000474056 KRT40Q6A162 431 aa20.22■□□□□ 0.83
UPF3A-203ENST00000474056 PPP4R3AQ6IN85 833 aa20.22■□□□□ 0.83
UPF3A-203ENST00000474056 RDM1Q8NG50 284 aa20.22■□□□□ 0.83
UPF3A-203ENST00000474056 LINC01599Q8WXQ3 324 aa20.22■□□□□ 0.83
UPF3A-203ENST00000474056 PPP1R16BQ96T49 567 aa20.22■□□□□ 0.83
UPF3A-203ENST00000474056 BRMS1Q9HCU9 246 aa20.22■□□□□ 0.83
UPF3A-203ENST00000474056 KCNMB3Q9NPA1 279 aa20.22■□□□□ 0.83
UPF3A-203ENST00000474056 CEP131Q9UPN4 1083 aa20.22■□□□□ 0.83
UPF3A-203ENST00000474056 SQORQ9Y6N5 450 aa20.22■□□□□ 0.83
UPF3A-203ENST00000474056 KIAA1671Q9BY89 1806 aa20.22■□□□□ 0.83
UPF3A-203ENST00000474056 COL4A6Q14031 1691 aa20.22■□□□□ 0.83
UPF3A-203ENST00000474056 ARID2Q68CP9 1835 aa20.21■□□□□ 0.83
UPF3A-203ENST00000474056 RBM25P49756 843 aaKnown RBP20.21■□□□□ 0.83
UPF3A-203ENST00000474056 POTEDQ86YR6 584 aa20.21■□□□□ 0.83
UPF3A-203ENST00000474056 CDHR5Q9HBB8 845 aa20.21■□□□□ 0.83
UPF3A-203ENST00000474056 MTUS1Q9ULD2 1270 aa20.21■□□□□ 0.83
UPF3A-203ENST00000474056 GINS2Q9Y248 185 aa20.21■□□□□ 0.83
UPF3A-203ENST00000474056 SPTBN5Q9NRC6 3674 aaKnown RBP20.21■□□□□ 0.83
UPF3A-203ENST00000474056 TRANK1O15050 2925 aa20.2■□□□□ 0.82
UPF3A-203ENST00000474056 ATG2AQ2TAZ0 1938 aa20.2■□□□□ 0.82
UPF3A-203ENST00000474056 BTBD18B2RXH4 712 aa20.2■□□□□ 0.82
UPF3A-203ENST00000474056 EML1O00423 815 aa20.2■□□□□ 0.82
UPF3A-203ENST00000474056 ENPP3O14638 875 aa20.2■□□□□ 0.82
UPF3A-203ENST00000474056 CLCN3P51790 818 aa20.2■□□□□ 0.82
UPF3A-203ENST00000474056 CCDC85BQ15834 202 aaPredicted RBP20.2■□□□□ 0.82
UPF3A-203ENST00000474056 TMEM266Q2M3C6 531 aa20.2■□□□□ 0.82
UPF3A-203ENST00000474056 DIS3L2Q8IYB7 885 aaKnown RBP20.2■□□□□ 0.82
UPF3A-203ENST00000474056 MICALL1Q8N3F8 863 aa20.2■□□□□ 0.82
UPF3A-203ENST00000474056 METTL13Q8N6R0 699 aa20.2■□□□□ 0.82
UPF3A-203ENST00000474056 SP7Q8TDD2 431 aaPredicted RBP20.2■□□□□ 0.82
UPF3A-203ENST00000474056 TMEM40Q8WWA1 233 aa20.2■□□□□ 0.82
UPF3A-203ENST00000474056 TGS1Q96RS0 853 aaKnown RBP20.2■□□□□ 0.82
UPF3A-203ENST00000474056 PRDM6Q9NQX0 595 aa20.2■□□□□ 0.82
UPF3A-203ENST00000474056 NRBP2Q9NSY0 501 aa20.2■□□□□ 0.82
UPF3A-203ENST00000474056 VAV3Q9UKW4 847 aa20.2■□□□□ 0.82
UPF3A-203ENST00000474056 PADI3Q9ULW8 664 aa20.2■□□□□ 0.82
UPF3A-203ENST00000474056 LPXNO60711 386 aa20.19■□□□□ 0.82
UPF3A-203ENST00000474056 VTNP04004 478 aa20.19■□□□□ 0.82
UPF3A-203ENST00000474056 ERVK-21P61565 698 aa20.19■□□□□ 0.82
UPF3A-203ENST00000474056 PAK2Q13177 524 aa20.19■□□□□ 0.82
UPF3A-203ENST00000474056 GRB10Q13322 594 aa20.19■□□□□ 0.82
UPF3A-203ENST00000474056 PPP2R5CQ13362 524 aa20.19■□□□□ 0.82
UPF3A-203ENST00000474056 TRIM29Q14134 588 aa20.19■□□□□ 0.82
UPF3A-203ENST00000474056 LRRC71Q8N4P6 559 aa20.19■□□□□ 0.82
UPF3A-203ENST00000474056 LINC01465Q8N7H1 131 aa20.19■□□□□ 0.82
UPF3A-203ENST00000474056 BANK1Q8NDB2 785 aa20.19■□□□□ 0.82
UPF3A-203ENST00000474056 GDPD5Q8WTR4 605 aa20.19■□□□□ 0.82
UPF3A-203ENST00000474056 HAS1Q92839 578 aa20.19■□□□□ 0.82
UPF3A-203ENST00000474056 ZSCAN31Q96LW9 406 aaPredicted RBP20.19■□□□□ 0.82
UPF3A-203ENST00000474056 FAM20AQ96MK3 541 aa20.19■□□□□ 0.82
UPF3A-203ENST00000474056 YME1L1Q96TA2 773 aa20.19■□□□□ 0.82
UPF3A-203ENST00000474056 NAP1L4Q99733 375 aaKnown RBP20.19■□□□□ 0.82
UPF3A-203ENST00000474056 MTCH2Q9Y6C9 303 aa20.19■□□□□ 0.82
UPF3A-203ENST00000474056 FNDC1Q4ZHG4 1894 aaPredicted RBP20.19■□□□□ 0.82
UPF3A-203ENST00000474056 TMEM150BA6NC51 233 aa20.18■□□□□ 0.82
UPF3A-203ENST00000474056 WNT7AO00755 349 aa20.18■□□□□ 0.82
UPF3A-203ENST00000474056 MAGEB2O15479 319 aa20.18■□□□□ 0.82
UPF3A-203ENST00000474056 STBD1O95210 358 aa20.18■□□□□ 0.82
UPF3A-203ENST00000474056 GUCY1B3Q02153 619 aa20.18■□□□□ 0.82
UPF3A-203ENST00000474056 KIZQ2M2Z5 673 aa20.18■□□□□ 0.82
UPF3A-203ENST00000474056 EFCAB12Q6NXP0 572 aa20.18■□□□□ 0.82
UPF3A-203ENST00000474056 RTN4RL1Q86UN2 441 aaPredicted RBP20.18■□□□□ 0.82
UPF3A-203ENST00000474056 OSMRQ99650 979 aa20.18■□□□□ 0.82
UPF3A-203ENST00000474056 C17orf80Q9BSJ5 609 aa20.18■□□□□ 0.82
UPF3A-203ENST00000474056 SEPT9Q9UHD8 586 aaPredicted RBP20.18■□□□□ 0.82
UPF3A-203ENST00000474056 NOC2LQ9Y3T9 749 aaKnown RBP20.18■□□□□ 0.82
UPF3A-203ENST00000474056 REV3LO60673 3130 aa20.17■□□□□ 0.82
UPF3A-203ENST00000474056 TBX3O15119 743 aa20.17■□□□□ 0.82
UPF3A-203ENST00000474056 GTPBP6O43824 516 aaPredicted RBP20.17■□□□□ 0.82
UPF3A-203ENST00000474056 GPR32O75388 356 aa20.17■□□□□ 0.82
UPF3A-203ENST00000474056 POU3F3P20264 500 aaPredicted RBP20.17■□□□□ 0.82
UPF3A-203ENST00000474056 NFX1Q12986 1120 aaKnown RBP20.17■□□□□ 0.82
UPF3A-203ENST00000474056 TARBP2Q15633 366 aaKnown RBP20.17■□□□□ 0.82
UPF3A-203ENST00000474056 MTERF2Q49AM1 385 aa20.17■□□□□ 0.82
UPF3A-203ENST00000474056 CEP89Q96ST8 783 aa20.17■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms