RNA–Protein interactions for RNA: ENST00000467885.6

USP39-213, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 338 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-213ENST00000467885 C7orf25Q9BPX7 421 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 NIFKQ9BYG3 293 aaKnown RBP6.66□□□□□ -1.34
USP39-213ENST00000467885 ANKEF1Q9NU02 776 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 DDX19AQ9NUU7 478 aaKnown RBP6.66□□□□□ -1.34
USP39-213ENST00000467885 GABBR1Q9UBS5 961 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 ZHX1Q9UKY1 873 aaPredicted RBP6.66□□□□□ -1.34
USP39-213ENST00000467885 SAMM50Q9Y512 469 aa6.66□□□□□ -1.34
USP39-213ENST00000467885 PCNTO95613 3336 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 TMEM150BA6NC51 233 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 MYMKA6NI61 221 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 EYA4O95677 639 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 HMGCRP04035 888 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 PLA2G4BP0C869 781 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 HSPA1AP0DMV8 641 aaKnown RBP6.65□□□□□ -1.34
USP39-213ENST00000467885 HSPA1BP0DMV9 641 aaKnown RBP6.65□□□□□ -1.34
USP39-213ENST00000467885 AKR1A1P14550 325 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 CASP1P29466 404 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 CNGA1P29973 690 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 AFMP43652 599 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 CTCFP49711 727 aaPredicted RBP6.65□□□□□ -1.34
USP39-213ENST00000467885 NPEPPSP55786 919 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 SP4Q02446 784 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 DPYDQ12882 1025 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 GIT2Q14161 759 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 MFSD10Q14728 455 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 ZRSR1Q15695 479 aaKnown RBP6.65□□□□□ -1.34
USP39-213ENST00000467885 XKR3Q5GH77 459 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 UTP14CQ5TAP6 766 aaKnown RBP6.65□□□□□ -1.34
USP39-213ENST00000467885 NT5DC1Q5TFE4 455 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 RINT1Q6NUQ1 792 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 KANK3Q6NY19 840 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 CNNM4Q6P4Q7 775 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 C1orf186Q6ZWK4 172 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 SV2BQ7L1I2 683 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 GRAMD1CQ8IYS0 662 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 CNNM3Q8NE01 707 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 ERMNQ8TAM6 284 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 NEK9Q8TD19 979 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 SH3TC2Q8TF17 1288 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 KAT2BQ92831 832 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 ERCC4Q92889 916 aaPredicted RBP6.65□□□□□ -1.34
USP39-213ENST00000467885 LENG1Q96BZ8 264 aaPredicted RBP6.65□□□□□ -1.34
USP39-213ENST00000467885 PYM1Q9BRP8 204 aaKnown RBP6.65□□□□□ -1.34
USP39-213ENST00000467885 NT5C3AQ9H0P0 336 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 UPF3AQ9H1J1 476 aaKnown RBP6.65□□□□□ -1.34
USP39-213ENST00000467885 CUEDC2Q9H467 287 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 CLSTN2Q9H4D0 955 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 SMARCAD1Q9H4L7 1026 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 POLD4Q9HCU8 107 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 HMX1Q9NP08 348 aaPredicted RBP6.65□□□□□ -1.34
USP39-213ENST00000467885 ZNF302Q9NR11 478 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 NRBP2Q9NSY0 501 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 KIAA1468Q9P260 1216 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 STK17AQ9UEE5 414 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 TUBE1Q9UJT0 475 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 DBR1Q9UK59 544 aaKnown RBP6.65□□□□□ -1.34
USP39-213ENST00000467885 PCDHA5Q9Y5H7 936 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 MYH6P13533 1939 aa6.65□□□□□ -1.34
USP39-213ENST00000467885 ZNFX1Q9P2E3 1918 aaKnown RBP6.64□□□□□ -1.35
USP39-213ENST00000467885 NPHP3-ACAD11A0A0J9YXS1 232 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 MYADML2A6NDP7 307 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 SFI1A8K8P3 1242 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 ZBTB42B2RXF5 422 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 H3BRB1 525 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 HAS3O00219 553 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 KLRC4O43908 158 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 ADAMTS4O75173 837 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 PGK1P00558 417 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 INHAP05111 366 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 MMP3P08254 477 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 CYP11B2P19099 503 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 BMP6P22004 513 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 YWHABP31946 246 aaKnown RBP6.64□□□□□ -1.35
USP39-213ENST00000467885 STAT6P42226 847 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 RARRES1P49788 294 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 BEX3Q00994 111 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 PNOCQ13519 176 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 CUL4BQ13620 913 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 HIC1Q14526 733 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 DHX8Q14562 1220 aaKnown RBP6.64□□□□□ -1.35
USP39-213ENST00000467885 PLCB4Q15147 1175 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 MTFR1Q15390 333 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 KCNA10Q16322 511 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 PKN2Q16513 984 aaKnown RBP6.64□□□□□ -1.35
USP39-213ENST00000467885 DGKDQ16760 1214 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 GNASQ5JWF2 1037 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 HAUS3Q68CZ6 603 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 CAVIN1Q6NZI2 390 aaKnown RBP6.64□□□□□ -1.35
USP39-213ENST00000467885 OTUD6AQ7L8S5 288 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 CTU1Q7Z7A3 348 aaKnown RBP6.64□□□□□ -1.35
USP39-213ENST00000467885 LAPTM4BQ86VI4 370 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 OR6J1Q8NGC5 347 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 LARP4BQ92615 738 aaKnown RBP6.64□□□□□ -1.35
USP39-213ENST00000467885 SH2D3AQ9BRG2 576 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 LXNQ9BS40 222 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 TRIM9Q9C026 710 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 AP5M1Q9H0R1 490 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 BLZF1Q9H2G9 400 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 BHMT2Q9H2M3 363 aa6.64□□□□□ -1.35
USP39-213ENST00000467885 TUT1Q9H6E5 874 aaKnown RBP6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms