RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 C1orf112Q9NSG2 853 aa17.47■□□□□ 0.39
SKA3-204ENST00000462482 PCDHB12Q9Y5F1 795 aa17.47■□□□□ 0.39
SKA3-204ENST00000462482 MICAL3Q7RTP6 2002 aa17.47■□□□□ 0.39
SKA3-204ENST00000462482 ESYT2A0FGR8 921 aa17.46■□□□□ 0.39
SKA3-204ENST00000462482 PRR33A8MZF0 331 aa17.46■□□□□ 0.39
SKA3-204ENST00000462482 FAM86B1E9PN63 330 aa17.46■□□□□ 0.39
SKA3-204ENST00000462482 DCXO43602 365 aa17.46■□□□□ 0.39
SKA3-204ENST00000462482 PSAPP07602 524 aa17.46■□□□□ 0.39
SKA3-204ENST00000462482 FAM86B2P0C5J1 330 aa17.46■□□□□ 0.39
SKA3-204ENST00000462482 LINC00271P0C7V0 271 aa17.46■□□□□ 0.39
SKA3-204ENST00000462482 CLUL1Q15846 466 aa17.46■□□□□ 0.39
SKA3-204ENST00000462482 TMEM266Q2M3C6 531 aa17.46■□□□□ 0.39
SKA3-204ENST00000462482 CTC1Q2NKJ3 1217 aa17.46■□□□□ 0.39
SKA3-204ENST00000462482 CCDC60Q8IWA6 550 aaPredicted RBP17.46■□□□□ 0.39
SKA3-204ENST00000462482 SMAP1Q8IYB5 467 aaPredicted RBP17.46■□□□□ 0.39
SKA3-204ENST00000462482 BBXQ8WY36 941 aaPredicted RBP17.46■□□□□ 0.39
SKA3-204ENST00000462482 JAKMIP1Q96N16 626 aaKnown RBP17.46■□□□□ 0.39
SKA3-204ENST00000462482 CEP131Q9UPN4 1083 aa17.46■□□□□ 0.39
SKA3-204ENST00000462482 ZP2Q05996 745 aa17.45■□□□□ 0.38
SKA3-204ENST00000462482 APOBRQ0VD83 1088 aa17.45■□□□□ 0.38
SKA3-204ENST00000462482 SMAD4Q13485 552 aaKnown RBP17.45■□□□□ 0.38
SKA3-204ENST00000462482 SMAD2Q15796 467 aaKnown RBP17.45■□□□□ 0.38
SKA3-204ENST00000462482 ZNF746Q6NUN9 644 aaPredicted RBP17.45■□□□□ 0.38
SKA3-204ENST00000462482 BLOC1S2Q6QNY1 142 aa17.45■□□□□ 0.38
SKA3-204ENST00000462482 Q6ZUG5 572 aa17.45■□□□□ 0.38
SKA3-204ENST00000462482 SLC24A5Q71RS6 500 aa17.45■□□□□ 0.38
SKA3-204ENST00000462482 KIAA0319LQ8IZA0 1049 aa17.45■□□□□ 0.38
SKA3-204ENST00000462482 METTL13Q8N6R0 699 aa17.45■□□□□ 0.38
SKA3-204ENST00000462482 KLHL23Q8NBE8 558 aa17.45■□□□□ 0.38
SKA3-204ENST00000462482 CCDC148Q8NFR7 591 aa17.45■□□□□ 0.38
SKA3-204ENST00000462482 MICAL1Q8TDZ2 1067 aa17.45■□□□□ 0.38
SKA3-204ENST00000462482 BRF1Q92994 677 aa17.45■□□□□ 0.38
SKA3-204ENST00000462482 ZMYND12Q9H0C1 365 aa17.45■□□□□ 0.38
SKA3-204ENST00000462482 FAM217BQ9NTX9 383 aaPredicted RBP17.45■□□□□ 0.38
SKA3-204ENST00000462482 CD207Q9UJ71 328 aa17.45■□□□□ 0.38
SKA3-204ENST00000462482 SAMM50Q9Y512 469 aa17.45■□□□□ 0.38
SKA3-204ENST00000462482 PRPF3O43395 683 aaKnown RBP17.44■□□□□ 0.38
SKA3-204ENST00000462482 ITGB1P05556 798 aa17.44■□□□□ 0.38
SKA3-204ENST00000462482 TMOD1P28289 359 aa17.44■□□□□ 0.38
SKA3-204ENST00000462482 LTBRP36941 435 aa17.44■□□□□ 0.38
SKA3-204ENST00000462482 CRYBB1P53674 252 aaPredicted RBP17.44■□□□□ 0.38
SKA3-204ENST00000462482 TRMT1LQ7Z2T5 733 aaKnown RBP17.44■□□□□ 0.38
SKA3-204ENST00000462482 SPPL3Q8TCT6 385 aa17.44■□□□□ 0.38
SKA3-204ENST00000462482 POF1BQ8WVV4 589 aa17.44■□□□□ 0.38
SKA3-204ENST00000462482 FAM167AQ96KS9 214 aa17.44■□□□□ 0.38
SKA3-204ENST00000462482 MAP7D2Q96T17 732 aa17.44■□□□□ 0.38
SKA3-204ENST00000462482 ADAM2Q99965 735 aa17.44■□□□□ 0.38
SKA3-204ENST00000462482 TMX1Q9H3N1 280 aa17.44■□□□□ 0.38
SKA3-204ENST00000462482 ERVK-5Q9HDB9 667 aa17.44■□□□□ 0.38
SKA3-204ENST00000462482 C11orf16Q9NQ32 467 aa17.44■□□□□ 0.38
SKA3-204ENST00000462482 ST3GAL5Q9UNP4 418 aa17.44■□□□□ 0.38
SKA3-204ENST00000462482 NOC2LQ9Y3T9 749 aaKnown RBP17.44■□□□□ 0.38
SKA3-204ENST00000462482 PCDHA10Q9Y5I2 948 aa17.44■□□□□ 0.38
SKA3-204ENST00000462482 IGLV3-22A0A075B6J6 115 aa17.43■□□□□ 0.38
SKA3-204ENST00000462482 FSD2A1L4K1 749 aa17.43■□□□□ 0.38
SKA3-204ENST00000462482 TBKBP1A7MCY6 615 aa17.43■□□□□ 0.38
SKA3-204ENST00000462482 MAGEB2O15479 319 aa17.43■□□□□ 0.38
SKA3-204ENST00000462482 DHX15O43143 795 aaKnown RBP17.43■□□□□ 0.38
SKA3-204ENST00000462482 MBTPS2O43462 519 aa17.43■□□□□ 0.38
SKA3-204ENST00000462482 PPFIA3O75145 1194 aa17.43■□□□□ 0.38
SKA3-204ENST00000462482 PSMA5P28066 241 aa17.43■□□□□ 0.38
SKA3-204ENST00000462482 ADAM15Q13444 863 aa17.43■□□□□ 0.38
SKA3-204ENST00000462482 KIZQ2M2Z5 673 aa17.43■□□□□ 0.38
SKA3-204ENST00000462482 PRR16Q569H4 304 aa17.43■□□□□ 0.38
SKA3-204ENST00000462482 CRIPAKQ8N1N5 446 aa17.43■□□□□ 0.38
SKA3-204ENST00000462482 ZNF710Q8N1W2 664 aa17.43■□□□□ 0.38
SKA3-204ENST00000462482 ATP6V0A4Q9HBG4 840 aa17.43■□□□□ 0.38
SKA3-204ENST00000462482 RGS18Q9NS28 235 aa17.43■□□□□ 0.38
SKA3-204ENST00000462482 NRBP2Q9NSY0 501 aa17.43■□□□□ 0.38
SKA3-204ENST00000462482 WDR64B1ANS9 1081 aa17.42■□□□□ 0.38
SKA3-204ENST00000462482 C22orf31O95567 290 aa17.42■□□□□ 0.38
SKA3-204ENST00000462482 NRIP1P48552 1158 aa17.42■□□□□ 0.38
SKA3-204ENST00000462482 UBE3AQ05086 875 aa17.42■□□□□ 0.38
SKA3-204ENST00000462482 SKAP1Q86WV1 359 aa17.42■□□□□ 0.38
SKA3-204ENST00000462482 THNSL1Q8IYQ7 743 aa17.42■□□□□ 0.38
SKA3-204ENST00000462482 EFHBQ8N7U6 833 aa17.42■□□□□ 0.38
SKA3-204ENST00000462482 PPP1R16BQ96T49 567 aa17.42■□□□□ 0.38
SKA3-204ENST00000462482 OSMRQ99650 979 aa17.42■□□□□ 0.38
SKA3-204ENST00000462482 GABBR1Q9UBS5 961 aa17.42■□□□□ 0.38
SKA3-204ENST00000462482 AKT3Q9Y243 479 aa17.42■□□□□ 0.38
SKA3-204ENST00000462482 MAFBQ9Y5Q3 323 aaPredicted RBP17.42■□□□□ 0.38
SKA3-204ENST00000462482 C19orf67A6NJJ6 358 aa17.41■□□□□ 0.38
SKA3-204ENST00000462482 LINC01565O15544 149 aa17.41■□□□□ 0.38
SKA3-204ENST00000462482 HOXA2O43364 376 aa17.41■□□□□ 0.38
SKA3-204ENST00000462482 CPA1P15085 419 aa17.41■□□□□ 0.38
SKA3-204ENST00000462482 ZSCAN20P17040 1043 aaPredicted RBP17.41■□□□□ 0.38
SKA3-204ENST00000462482 GTF2F1P35269 517 aaKnown RBP eCLIP17.41■□□□□ 0.38
SKA3-204ENST00000462482 GATMP50440 423 aa17.41■□□□□ 0.38
SKA3-204ENST00000462482 DLX2Q07687 328 aaPredicted RBP17.41■□□□□ 0.38
SKA3-204ENST00000462482 CAMK1Q14012 370 aa17.41■□□□□ 0.38
SKA3-204ENST00000462482 RBM23Q86U06 439 aaKnown RBP17.41■□□□□ 0.38
SKA3-204ENST00000462482 CRYGNQ8WXF5 182 aa17.41■□□□□ 0.38
SKA3-204ENST00000462482 SCLT1Q96NL6 688 aa17.41■□□□□ 0.38
SKA3-204ENST00000462482 SLC26A6Q9BXS9 759 aa17.41■□□□□ 0.38
SKA3-204ENST00000462482 RNF26Q9BY78 433 aaPredicted RBP17.41■□□□□ 0.38
SKA3-204ENST00000462482 TLE6Q9H808 572 aa17.41■□□□□ 0.38
SKA3-204ENST00000462482 CDHR5Q9HBB8 845 aa17.41■□□□□ 0.38
SKA3-204ENST00000462482 TMEM161AQ9NX61 479 aa17.41■□□□□ 0.38
SKA3-204ENST00000462482 REV3LO60673 3130 aa17.4■□□□□ 0.38
SKA3-204ENST00000462482 DOCK5Q9H7D0 1870 aa17.4■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms