RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 STAG3L1P0CL83 205 aa18.3■□□□□ 0.52
COL7A1-204ENST00000462475 ATP4AP20648 1035 aa18.3■□□□□ 0.52
COL7A1-204ENST00000462475 FGD1P98174 961 aa18.3■□□□□ 0.52
COL7A1-204ENST00000462475 NFX1Q12986 1120 aaKnown RBP18.3■□□□□ 0.52
COL7A1-204ENST00000462475 SWSAP1Q6NVH7 229 aa18.3■□□□□ 0.52
COL7A1-204ENST00000462475 Q6ZUG5 572 aa18.3■□□□□ 0.52
COL7A1-204ENST00000462475 KIAA0319LQ8IZA0 1049 aa18.3■□□□□ 0.52
COL7A1-204ENST00000462475 P2RX5Q93086 422 aa18.3■□□□□ 0.52
COL7A1-204ENST00000462475 IGFLR1Q9H665 355 aa18.3■□□□□ 0.52
COL7A1-204ENST00000462475 ERVK-5Q9HDB9 667 aa18.3■□□□□ 0.52
COL7A1-204ENST00000462475 FAM50BQ9Y247 325 aa18.3■□□□□ 0.52
COL7A1-204ENST00000462475 NOC2LQ9Y3T9 749 aaKnown RBP18.3■□□□□ 0.52
COL7A1-204ENST00000462475 COL1A2P08123 1366 aa18.3■□□□□ 0.52
COL7A1-204ENST00000462475 IRS1P35568 1242 aa18.29■□□□□ 0.52
COL7A1-204ENST00000462475 SARSP49591 514 aaKnown RBP18.29■□□□□ 0.52
COL7A1-204ENST00000462475 PKN1Q16512 942 aa18.29■□□□□ 0.52
COL7A1-204ENST00000462475 MIS18BP1Q6P0N0 1132 aa18.29■□□□□ 0.52
COL7A1-204ENST00000462475 ADGRD2Q7Z7M1 963 aa18.29■□□□□ 0.52
COL7A1-204ENST00000462475 REXO1Q8N1G1 1221 aaKnown RBP18.29■□□□□ 0.52
COL7A1-204ENST00000462475 KLHL23Q8NBE8 558 aa18.29■□□□□ 0.52
COL7A1-204ENST00000462475 SPPL3Q8TCT6 385 aa18.29■□□□□ 0.52
COL7A1-204ENST00000462475 BRF1Q92994 677 aa18.29■□□□□ 0.52
COL7A1-204ENST00000462475 JAKMIP1Q96N16 626 aaKnown RBP18.29■□□□□ 0.52
COL7A1-204ENST00000462475 PPP1R16BQ96T49 567 aa18.29■□□□□ 0.52
COL7A1-204ENST00000462475 ZNF577Q9BSK1 485 aa18.29■□□□□ 0.52
COL7A1-204ENST00000462475 ZMYND12Q9H0C1 365 aa18.29■□□□□ 0.52
COL7A1-204ENST00000462475 NID2Q14112 1375 aa18.29■□□□□ 0.52
COL7A1-204ENST00000462475 KIAA1671Q9BY89 1806 aa18.28■□□□□ 0.52
COL7A1-204ENST00000462475 PPFIA3O75145 1194 aa18.28■□□□□ 0.52
COL7A1-204ENST00000462475 RPS6KA5O75582 802 aa18.28■□□□□ 0.52
COL7A1-204ENST00000462475 C22orf31O95567 290 aa18.28■□□□□ 0.52
COL7A1-204ENST00000462475 SETQ01105 290 aaPredicted RBP18.28■□□□□ 0.52
COL7A1-204ENST00000462475 ZNF484Q5JVG2 852 aa18.28■□□□□ 0.52
COL7A1-204ENST00000462475 ADHFE1Q8IWW8 467 aa18.28■□□□□ 0.52
COL7A1-204ENST00000462475 RASGRP4Q8TDF6 673 aa18.28■□□□□ 0.52
COL7A1-204ENST00000462475 KCNB2Q92953 911 aa18.28■□□□□ 0.52
COL7A1-204ENST00000462475 PHKBQ93100 1093 aa18.28■□□□□ 0.52
COL7A1-204ENST00000462475 C6orf50Q9HD87 102 aa18.28■□□□□ 0.52
COL7A1-204ENST00000462475 PRKAG3Q9UGI9 489 aa18.28■□□□□ 0.52
COL7A1-204ENST00000462475 LRFN2Q9ULH4 789 aa18.28■□□□□ 0.52
COL7A1-204ENST00000462475 CCDC196A0A1B0GTZ2 297 aa18.27■□□□□ 0.52
COL7A1-204ENST00000462475 C19orf67A6NJJ6 358 aa18.27■□□□□ 0.52
COL7A1-204ENST00000462475 MBTPS2O43462 519 aa18.27■□□□□ 0.52
COL7A1-204ENST00000462475 DCXO43602 365 aa18.27■□□□□ 0.52
COL7A1-204ENST00000462475 ALADP13716 330 aa18.27■□□□□ 0.52
COL7A1-204ENST00000462475 SMAD2Q15796 467 aaKnown RBP18.27■□□□□ 0.52
COL7A1-204ENST00000462475 KIZQ2M2Z5 673 aa18.27■□□□□ 0.52
COL7A1-204ENST00000462475 NAALADL2Q58DX5 795 aa18.27■□□□□ 0.52
COL7A1-204ENST00000462475 TRMT1LQ7Z2T5 733 aaKnown RBP18.27■□□□□ 0.52
COL7A1-204ENST00000462475 CKAP2LQ8IYA6 745 aa18.27■□□□□ 0.52
COL7A1-204ENST00000462475 POF1BQ8WVV4 589 aa18.27■□□□□ 0.52
COL7A1-204ENST00000462475 OSMRQ99650 979 aa18.27■□□□□ 0.52
COL7A1-204ENST00000462475 ADAM2Q99965 735 aa18.27■□□□□ 0.52
COL7A1-204ENST00000462475 ST3GAL5Q9UNP4 418 aa18.27■□□□□ 0.52
COL7A1-204ENST00000462475 ARIH1Q9Y4X5 557 aaPredicted RBP18.27■□□□□ 0.52
COL7A1-204ENST00000462475 PCDHGC5Q9Y5F6 944 aa18.27■□□□□ 0.52
COL7A1-204ENST00000462475 MAFBQ9Y5Q3 323 aaPredicted RBP18.27■□□□□ 0.52
COL7A1-204ENST00000462475 SNX14Q9Y5W7 946 aa18.27■□□□□ 0.52
COL7A1-204ENST00000462475 PRR33A8MZF0 331 aa18.26■□□□□ 0.51
COL7A1-204ENST00000462475 PRPF3O43395 683 aaKnown RBP18.26■□□□□ 0.51
COL7A1-204ENST00000462475 VTNP04004 478 aa18.26■□□□□ 0.51
COL7A1-204ENST00000462475 HSPA4P34932 840 aa18.26■□□□□ 0.51
COL7A1-204ENST00000462475 ADAM15Q13444 863 aa18.26■□□□□ 0.51
COL7A1-204ENST00000462475 SMAD4Q13485 552 aaKnown RBP18.26■□□□□ 0.51
COL7A1-204ENST00000462475 PRR16Q569H4 304 aa18.26■□□□□ 0.51
COL7A1-204ENST00000462475 ZNF746Q6NUN9 644 aaPredicted RBP18.26■□□□□ 0.51
COL7A1-204ENST00000462475 BLOC1S2Q6QNY1 142 aa18.26■□□□□ 0.51
COL7A1-204ENST00000462475 FAM228AQ86W67 206 aa18.26■□□□□ 0.51
COL7A1-204ENST00000462475 CCDC12Q8WUD4 166 aaPredicted RBP18.26■□□□□ 0.51
COL7A1-204ENST00000462475 BBXQ8WY36 941 aaPredicted RBP18.26■□□□□ 0.51
COL7A1-204ENST00000462475 TBC1D22BQ9NU19 505 aa18.26■□□□□ 0.51
COL7A1-204ENST00000462475 HCSTQ9UBK5 93 aa18.26■□□□□ 0.51
COL7A1-204ENST00000462475 PCDHB7Q9Y5E2 793 aa18.26■□□□□ 0.51
COL7A1-204ENST00000462475 LOXHD1Q8IVV2 1947 aa18.25■□□□□ 0.51
COL7A1-204ENST00000462475 DENND3A2RUS2 1198 aa18.25■□□□□ 0.51
COL7A1-204ENST00000462475 NDUFV1P49821 464 aa18.25■□□□□ 0.51
COL7A1-204ENST00000462475 FAM102BQ5T8I3 360 aa18.25■□□□□ 0.51
COL7A1-204ENST00000462475 MCTP2Q6DN12 878 aa18.25■□□□□ 0.51
COL7A1-204ENST00000462475 SMAP1Q8IYB5 467 aaPredicted RBP18.25■□□□□ 0.51
COL7A1-204ENST00000462475 LENG9Q96B70 501 aa18.25■□□□□ 0.51
COL7A1-204ENST00000462475 RGS18Q9NS28 235 aa18.25■□□□□ 0.51
COL7A1-204ENST00000462475 C1orf112Q9NSG2 853 aa18.25■□□□□ 0.51
COL7A1-204ENST00000462475 GABBR1Q9UBS5 961 aa18.25■□□□□ 0.51
COL7A1-204ENST00000462475 CD207Q9UJ71 328 aa18.25■□□□□ 0.51
COL7A1-204ENST00000462475 TBKBP1A7MCY6 615 aa18.24■□□□□ 0.51
COL7A1-204ENST00000462475 C9IYK1 514 aa18.24■□□□□ 0.51
COL7A1-204ENST00000462475 GPR182O15218 404 aa18.24■□□□□ 0.51
COL7A1-204ENST00000462475 GPR32O75388 356 aa18.24■□□□□ 0.51
COL7A1-204ENST00000462475 PSAPP07602 524 aa18.24■□□□□ 0.51
COL7A1-204ENST00000462475 RPS6KB1P23443 525 aa18.24■□□□□ 0.51
COL7A1-204ENST00000462475 GNA11P29992 359 aa18.24■□□□□ 0.51
COL7A1-204ENST00000462475 CIITAP33076 1130 aa18.24■□□□□ 0.51
COL7A1-204ENST00000462475 NRIP1P48552 1158 aa18.24■□□□□ 0.51
COL7A1-204ENST00000462475 CLCN3P51790 818 aa18.24■□□□□ 0.51
COL7A1-204ENST00000462475 CRYBB1P53674 252 aaPredicted RBP18.24■□□□□ 0.51
COL7A1-204ENST00000462475 NTRK3Q16288 839 aa18.24■□□□□ 0.51
COL7A1-204ENST00000462475 SLC24A5Q71RS6 500 aa18.24■□□□□ 0.51
COL7A1-204ENST00000462475 METTL13Q8N6R0 699 aa18.24■□□□□ 0.51
COL7A1-204ENST00000462475 PPP2R3CQ969Q6 453 aa18.24■□□□□ 0.51
COL7A1-204ENST00000462475 MSLNLQ96KJ4 702 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms