RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 TRPV2Q9Y5S1 764 aa21.02■□□□□ 0.96
USP39-209ENST00000458268 SMIM35A0A1B0GVV1 85 aa21.01■□□□□ 0.95
USP39-209ENST00000458268 DDX11L8A8MPP1 907 aa21.01■□□□□ 0.95
USP39-209ENST00000458268 KIF28PB7ZC32 967 aa21.01■□□□□ 0.95
USP39-209ENST00000458268 TLL1O43897 1013 aa21.01■□□□□ 0.95
USP39-209ENST00000458268 NEMFO60524 1076 aa21.01■□□□□ 0.95
USP39-209ENST00000458268 UPP2O95045 317 aa21.01■□□□□ 0.95
USP39-209ENST00000458268 GJB2P29033 226 aa21.01■□□□□ 0.95
USP39-209ENST00000458268 CLCN3P51790 818 aa21.01■□□□□ 0.95
USP39-209ENST00000458268 MGAT3Q09327 533 aa21.01■□□□□ 0.95
USP39-209ENST00000458268 PLEKHG4Q58EX7 1191 aa21.01■□□□□ 0.95
USP39-209ENST00000458268 FAM26DQ5JW98 314 aa21.01■□□□□ 0.95
USP39-209ENST00000458268 IER5Q5VY09 327 aa21.01■□□□□ 0.95
USP39-209ENST00000458268 LIN28BQ6ZN17 250 aaKnown RBP eCLIP21.01■□□□□ 0.95
USP39-209ENST00000458268 LRRC71Q8N4P6 559 aa21.01■□□□□ 0.95
USP39-209ENST00000458268 FBXO18Q8NFZ0 1043 aa21.01■□□□□ 0.95
USP39-209ENST00000458268 ZNF668Q96K58 619 aaPredicted RBP21.01■□□□□ 0.95
USP39-209ENST00000458268 CERS4Q9HA82 394 aa21.01■□□□□ 0.95
USP39-209ENST00000458268 SUGCTQ9HAC7 445 aa21.01■□□□□ 0.95
USP39-209ENST00000458268 VAV3Q9UKW4 847 aa21.01■□□□□ 0.95
USP39-209ENST00000458268 CEP131Q9UPN4 1083 aa21.01■□□□□ 0.95
USP39-209ENST00000458268 AKT3Q9Y243 479 aa21.01■□□□□ 0.95
USP39-209ENST00000458268 MYO9BQ13459 2157 aa21■□□□□ 0.95
USP39-209ENST00000458268 ZBTB42B2RXF5 422 aa21■□□□□ 0.95
USP39-209ENST00000458268 C22orf31O95567 290 aa21■□□□□ 0.95
USP39-209ENST00000458268 AMHP03971 560 aa21■□□□□ 0.95
USP39-209ENST00000458268 VTNP04004 478 aa21■□□□□ 0.95
USP39-209ENST00000458268 CA3P07451 260 aa21■□□□□ 0.95
USP39-209ENST00000458268 CD52P31358 61 aa21■□□□□ 0.95
USP39-209ENST00000458268 TXKP42681 527 aa21■□□□□ 0.95
USP39-209ENST00000458268 MCM2P49736 904 aa21■□□□□ 0.95
USP39-209ENST00000458268 LPIN1Q14693 890 aa21■□□□□ 0.95
USP39-209ENST00000458268 SLFN12Q8IYM2 578 aa21■□□□□ 0.95
USP39-209ENST00000458268 RDM1Q8NG50 284 aa21■□□□□ 0.95
USP39-209ENST00000458268 SCLT1Q96NL6 688 aa21■□□□□ 0.95
USP39-209ENST00000458268 CDX2Q99626 313 aaPredicted RBP21■□□□□ 0.95
USP39-209ENST00000458268 SMC3Q9UQE7 1217 aa21■□□□□ 0.95
USP39-209ENST00000458268 PCDHA11Q9Y5I1 949 aa21■□□□□ 0.95
USP39-209ENST00000458268 EFCAB14O75071 495 aa20.99■□□□□ 0.95
USP39-209ENST00000458268 CYP4A11Q02928 519 aa20.99■□□□□ 0.95
USP39-209ENST00000458268 TBC1D8BQ0IIM8 1120 aa20.99■□□□□ 0.95
USP39-209ENST00000458268 PPP2R5CQ13362 524 aa20.99■□□□□ 0.95
USP39-209ENST00000458268 GRIN2CQ14957 1233 aa20.99■□□□□ 0.95
USP39-209ENST00000458268 ZNF174Q15697 407 aa20.99■□□□□ 0.95
USP39-209ENST00000458268 TMEM266Q2M3C6 531 aa20.99■□□□□ 0.95
USP39-209ENST00000458268 FBXO47Q5MNV8 452 aa20.99■□□□□ 0.95
USP39-209ENST00000458268 PLA2G4FQ68DD2 849 aa20.99■□□□□ 0.95
USP39-209ENST00000458268 PRDM12Q9H4Q4 367 aa20.99■□□□□ 0.95
USP39-209ENST00000458268 BMP2KQ9NSY1 1161 aaPredicted RBP20.99■□□□□ 0.95
USP39-209ENST00000458268 LAMA2P24043 3122 aaKnown RBP20.99■□□□□ 0.95
USP39-209ENST00000458268 H3BQV1 296 aa20.98■□□□□ 0.95
USP39-209ENST00000458268 TBX3O15119 743 aa20.98■□□□□ 0.95
USP39-209ENST00000458268 PSMC5P62195 406 aa20.98■□□□□ 0.95
USP39-209ENST00000458268 NBR1Q14596 966 aa20.98■□□□□ 0.95
USP39-209ENST00000458268 KIZQ2M2Z5 673 aa20.98■□□□□ 0.95
USP39-209ENST00000458268 XKR3Q5GH77 459 aa20.98■□□□□ 0.95
USP39-209ENST00000458268 EFCAB12Q6NXP0 572 aa20.98■□□□□ 0.95
USP39-209ENST00000458268 RPAINQ86UA6 219 aa20.98■□□□□ 0.95
USP39-209ENST00000458268 NOSTRINQ8IVI9 506 aa20.98■□□□□ 0.95
USP39-209ENST00000458268 KIAA0319LQ8IZA0 1049 aa20.98■□□□□ 0.95
USP39-209ENST00000458268 PHOSPHO2Q8TCD6 241 aa20.98■□□□□ 0.95
USP39-209ENST00000458268 DYDC2Q96IM9 177 aa20.98■□□□□ 0.95
USP39-209ENST00000458268 MAP7D2Q96T17 732 aa20.98■□□□□ 0.95
USP39-209ENST00000458268 CELF4Q9BZC1 486 aaKnown RBP20.98■□□□□ 0.95
USP39-209ENST00000458268 FOXP1Q9H334 677 aaPredicted RBP20.98■□□□□ 0.95
USP39-209ENST00000458268 RGL1Q9NZL6 768 aa20.98■□□□□ 0.95
USP39-209ENST00000458268 NOL7Q9UMY1 257 aaKnown RBP20.98■□□□□ 0.95
USP39-209ENST00000458268 TMEM265A0A087WTH1 108 aa20.97■□□□□ 0.95
USP39-209ENST00000458268 RPLP2P05387 115 aaKnown RBP20.97■□□□□ 0.95
USP39-209ENST00000458268 FOSL2P15408 326 aa20.97■□□□□ 0.95
USP39-209ENST00000458268 NFX1Q12986 1120 aaKnown RBP20.97■□□□□ 0.95
USP39-209ENST00000458268 PAK2Q13177 524 aa20.97■□□□□ 0.95
USP39-209ENST00000458268 CTTNQ14247 550 aaKnown RBP20.97■□□□□ 0.95
USP39-209ENST00000458268 TTC38Q5R3I4 469 aa20.97■□□□□ 0.95
USP39-209ENST00000458268 B3GNT9Q6UX72 402 aa20.97■□□□□ 0.95
USP39-209ENST00000458268 TSHZ1Q6ZSZ6 1077 aa20.97■□□□□ 0.95
USP39-209ENST00000458268 APBB2Q92870 758 aa20.97■□□□□ 0.95
USP39-209ENST00000458268 OSMRQ99650 979 aa20.97■□□□□ 0.95
USP39-209ENST00000458268 LXNQ9BS40 222 aa20.97■□□□□ 0.95
USP39-209ENST00000458268 TTC12Q9H892 705 aaPredicted RBP20.97■□□□□ 0.95
USP39-209ENST00000458268 AGO3Q9H9G7 860 aaKnown RBP20.97■□□□□ 0.95
USP39-209ENST00000458268 PCDHA12Q9UN75 941 aa20.97■□□□□ 0.95
USP39-209ENST00000458268 MAGEB2O15479 319 aa20.96■□□□□ 0.95
USP39-209ENST00000458268 TMOD1P28289 359 aa20.96■□□□□ 0.95
USP39-209ENST00000458268 QARSP47897 775 aaKnown RBP20.96■□□□□ 0.95
USP39-209ENST00000458268 EPHA7Q15375 998 aa20.96■□□□□ 0.95
USP39-209ENST00000458268 TPH2Q8IWU9 490 aa20.96■□□□□ 0.95
USP39-209ENST00000458268 NME8Q8N427 588 aa20.96■□□□□ 0.95
USP39-209ENST00000458268 TMEM60Q9H2L4 133 aa20.96■□□□□ 0.95
USP39-209ENST00000458268 CDHR5Q9HBB8 845 aa20.96■□□□□ 0.95
USP39-209ENST00000458268 MTUS1Q9ULD2 1270 aa20.96■□□□□ 0.95
USP39-209ENST00000458268 LCHNA4D1U4 455 aa20.95■□□□□ 0.94
USP39-209ENST00000458268 P4HBP07237 508 aaKnown RBP20.95■□□□□ 0.94
USP39-209ENST00000458268 IGFBP4P22692 258 aa20.95■□□□□ 0.94
USP39-209ENST00000458268 GAS2L1Q99501 681 aaPredicted RBP20.95■□□□□ 0.94
USP39-209ENST00000458268 FOXD4L1Q9NU39 408 aa20.95■□□□□ 0.94
USP39-209ENST00000458268 ZSCAN21Q9Y5A6 473 aaPredicted RBP20.95■□□□□ 0.94
USP39-209ENST00000458268 ARID2Q68CP9 1835 aa20.94■□□□□ 0.94
USP39-209ENST00000458268 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.94■□□□□ 0.94
USP39-209ENST00000458268 POTEMA6NI47 508 aa20.94■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms