RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 ME3Q16798 604 aa13.61□□□□□ -0.23
USP40-210ENST00000454354 LRCH2Q5VUJ6 765 aa13.61□□□□□ -0.23
USP40-210ENST00000454354 FAM43BQ6ZT52 329 aaPredicted RBP13.61□□□□□ -0.23
USP40-210ENST00000454354 RDM1Q8NG50 284 aa13.61□□□□□ -0.23
USP40-210ENST00000454354 ETNPPLQ8TBG4 499 aa13.61□□□□□ -0.23
USP40-210ENST00000454354 LINC01599Q8WXQ3 324 aa13.61□□□□□ -0.23
USP40-210ENST00000454354 PPM1EQ8WY54 764 aa13.61□□□□□ -0.23
USP40-210ENST00000454354 WASF1Q92558 559 aa13.61□□□□□ -0.23
USP40-210ENST00000454354 COL25A1Q9BXS0 654 aaPredicted RBP13.61□□□□□ -0.23
USP40-210ENST00000454354 UNC45AQ9H3U1 944 aa13.61□□□□□ -0.23
USP40-210ENST00000454354 AGO3Q9H9G7 860 aaKnown RBP13.61□□□□□ -0.23
USP40-210ENST00000454354 RC3H2Q9HBD1 1191 aaKnown RBP13.61□□□□□ -0.23
USP40-210ENST00000454354 PRDM6Q9NQX0 595 aa13.61□□□□□ -0.23
USP40-210ENST00000454354 DISC1Q9NRI5 854 aa13.61□□□□□ -0.23
USP40-210ENST00000454354 LMCD1Q9NZU5 365 aa13.61□□□□□ -0.23
USP40-210ENST00000454354 GABBR1Q9UBS5 961 aa13.61□□□□□ -0.23
USP40-210ENST00000454354 CEP131Q9UPN4 1083 aa13.61□□□□□ -0.23
USP40-210ENST00000454354 ZNF862O60290 1169 aa13.6□□□□□ -0.23
USP40-210ENST00000454354 OATP04181 439 aa13.6□□□□□ -0.23
USP40-210ENST00000454354 FDPSP14324 419 aaKnown RBP13.6□□□□□ -0.23
USP40-210ENST00000454354 CD52P31358 61 aa13.6□□□□□ -0.23
USP40-210ENST00000454354 NEK4P51957 841 aa13.6□□□□□ -0.23
USP40-210ENST00000454354 TMEM62Q0P6H9 643 aa13.6□□□□□ -0.23
USP40-210ENST00000454354 CCDC85BQ15834 202 aaPredicted RBP13.6□□□□□ -0.23
USP40-210ENST00000454354 INF2Q27J81 1249 aa13.6□□□□□ -0.23
USP40-210ENST00000454354 CKAP2LQ8IYA6 745 aa13.6□□□□□ -0.23
USP40-210ENST00000454354 KIAA0319LQ8IZA0 1049 aa13.6□□□□□ -0.23
USP40-210ENST00000454354 LINC01465Q8N7H1 131 aa13.6□□□□□ -0.23
USP40-210ENST00000454354 GDPD5Q8WTR4 605 aa13.6□□□□□ -0.23
USP40-210ENST00000454354 SAMD11Q96NU1 681 aa13.6□□□□□ -0.23
USP40-210ENST00000454354 FTHL17Q9BXU8 183 aa13.6□□□□□ -0.23
USP40-210ENST00000454354 THEGQ9P2T0 379 aa13.6□□□□□ -0.23
USP40-210ENST00000454354 ORC3Q9UBD5 711 aaPredicted RBP13.6□□□□□ -0.23
USP40-210ENST00000454354 SAMM50Q9Y512 469 aa13.6□□□□□ -0.23
USP40-210ENST00000454354 CCDC194A0A1B0GVG4 234 aa13.59□□□□□ -0.23
USP40-210ENST00000454354 ENPP3O14638 875 aa13.59□□□□□ -0.23
USP40-210ENST00000454354 SLC37A4O43826 429 aa13.59□□□□□ -0.23
USP40-210ENST00000454354 UPP2O95045 317 aa13.59□□□□□ -0.23
USP40-210ENST00000454354 PRKCEQ02156 737 aa13.59□□□□□ -0.23
USP40-210ENST00000454354 UGCGQ16739 394 aa13.59□□□□□ -0.23
USP40-210ENST00000454354 TJAP1Q5JTD0 557 aa13.59□□□□□ -0.23
USP40-210ENST00000454354 PPP4R3AQ6IN85 833 aa13.59□□□□□ -0.23
USP40-210ENST00000454354 NEK8Q86SG6 692 aa13.59□□□□□ -0.23
USP40-210ENST00000454354 CRIPAKQ8N1N5 446 aa13.59□□□□□ -0.23
USP40-210ENST00000454354 NECAB1Q8N987 351 aa13.59□□□□□ -0.23
USP40-210ENST00000454354 NSUN7Q8NE18 718 aaKnown RBP13.59□□□□□ -0.23
USP40-210ENST00000454354 ATXN2LQ8WWM7 1075 aaKnown RBP13.59□□□□□ -0.23
USP40-210ENST00000454354 GJA10Q969M2 543 aa13.59□□□□□ -0.23
USP40-210ENST00000454354 YME1L1Q96TA2 773 aa13.59□□□□□ -0.23
USP40-210ENST00000454354 C17orf80Q9BSJ5 609 aa13.59□□□□□ -0.23
USP40-210ENST00000454354 SUGCTQ9HAC7 445 aa13.59□□□□□ -0.23
USP40-210ENST00000454354 GJB4Q9NTQ9 266 aa13.59□□□□□ -0.23
USP40-210ENST00000454354 DDX25Q9UHL0 483 aaKnown RBP13.59□□□□□ -0.23
USP40-210ENST00000454354 MTUS1Q9ULD2 1270 aa13.59□□□□□ -0.23
USP40-210ENST00000454354 PADI3Q9ULW8 664 aa13.59□□□□□ -0.23
USP40-210ENST00000454354 TCF20Q9UGU0 1960 aaKnown RBP13.59□□□□□ -0.23
USP40-210ENST00000454354 MYO7AQ13402 2215 aa13.59□□□□□ -0.23
USP40-210ENST00000454354 MAGEB2O15479 319 aa13.58□□□□□ -0.24
USP40-210ENST00000454354 CHMP2AO43633 222 aa13.58□□□□□ -0.24
USP40-210ENST00000454354 LINC00271P0C7V0 271 aa13.58□□□□□ -0.24
USP40-210ENST00000454354 GCFC2P16383 781 aaKnown RBP13.58□□□□□ -0.24
USP40-210ENST00000454354 PAK2Q13177 524 aa13.58□□□□□ -0.24
USP40-210ENST00000454354 LETM2Q2VYF4 491 aa13.58□□□□□ -0.24
USP40-210ENST00000454354 C8orf34Q49A92 452 aa13.58□□□□□ -0.24
USP40-210ENST00000454354 KRT40Q6A162 431 aa13.58□□□□□ -0.24
USP40-210ENST00000454354 RTN4RL1Q86UN2 441 aaPredicted RBP13.58□□□□□ -0.24
USP40-210ENST00000454354 MICALL1Q8N3F8 863 aa13.58□□□□□ -0.24
USP40-210ENST00000454354 FBXO22Q8NEZ5 403 aa13.58□□□□□ -0.24
USP40-210ENST00000454354 OXER1Q8TDS5 423 aa13.58□□□□□ -0.24
USP40-210ENST00000454354 TNFRSF25Q93038 417 aa13.58□□□□□ -0.24
USP40-210ENST00000454354 ZNF689Q96CS4 500 aaPredicted RBP13.58□□□□□ -0.24
USP40-210ENST00000454354 NAP1L4Q99733 375 aaKnown RBP13.58□□□□□ -0.24
USP40-210ENST00000454354 TSPYL2Q9H2G4 693 aaPredicted RBP13.58□□□□□ -0.24
USP40-210ENST00000454354 ERVK-5Q9HDB9 667 aa13.58□□□□□ -0.24
USP40-210ENST00000454354 KCNMB3Q9NPA1 279 aa13.58□□□□□ -0.24
USP40-210ENST00000454354 PLXNA4Q9HCM2 1894 aa13.58□□□□□ -0.24
USP40-210ENST00000454354 ADGRA3Q8IWK6 1321 aa13.58□□□□□ -0.24
USP40-210ENST00000454354 TBX3O15119 743 aa13.57□□□□□ -0.24
USP40-210ENST00000454354 DTNBO60941 627 aa13.57□□□□□ -0.24
USP40-210ENST00000454354 CRYBB1P53674 252 aaPredicted RBP13.57□□□□□ -0.24
USP40-210ENST00000454354 ST3GAL1Q11201 340 aa13.57□□□□□ -0.24
USP40-210ENST00000454354 TARBP2Q15633 366 aaKnown RBP13.57□□□□□ -0.24
USP40-210ENST00000454354 EPC2Q52LR7 807 aa13.57□□□□□ -0.24
USP40-210ENST00000454354 EARS2Q5JPH6 523 aaKnown RBP13.57□□□□□ -0.24
USP40-210ENST00000454354 PIK3AP1Q6ZUJ8 805 aa13.57□□□□□ -0.24
USP40-210ENST00000454354 MIER3Q7Z3K6 550 aa13.57□□□□□ -0.24
USP40-210ENST00000454354 ZNF710Q8N1W2 664 aa13.57□□□□□ -0.24
USP40-210ENST00000454354 TMEM40Q8WWA1 233 aa13.57□□□□□ -0.24
USP40-210ENST00000454354 SYMPKQ92797 1274 aaKnown RBP13.57□□□□□ -0.24
USP40-210ENST00000454354 FAM20AQ96MK3 541 aa13.57□□□□□ -0.24
USP40-210ENST00000454354 TMX1Q9H3N1 280 aa13.57□□□□□ -0.24
USP40-210ENST00000454354 CDHR5Q9HBB8 845 aa13.57□□□□□ -0.24
USP40-210ENST00000454354 NRBP2Q9NSY0 501 aa13.57□□□□□ -0.24
USP40-210ENST00000454354 VAV3Q9UKW4 847 aa13.57□□□□□ -0.24
USP40-210ENST00000454354 C5orf67F2Z3F1 127 aa13.56□□□□□ -0.24
USP40-210ENST00000454354 GPR32O75388 356 aa13.56□□□□□ -0.24
USP40-210ENST00000454354 DGKIO75912 1065 aa13.56□□□□□ -0.24
USP40-210ENST00000454354 STBD1O95210 358 aa13.56□□□□□ -0.24
USP40-210ENST00000454354 KRT2P35908 639 aa13.56□□□□□ -0.24
USP40-210ENST00000454354 CLCN3P51790 818 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms