RNA–Protein interactions for RNA: ENST00000440097.5

LIMD1-202, Transcript of LIM domains containing 1, humanhuman

TSL 5 BASIC

Gene LIMD1, Length 2,773 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1-202ENST00000440097 GPC2Q8N158 579 aa15.54■□□□□ 0.08
LIMD1-202ENST00000440097 SYTL5Q8TDW5 730 aaPredicted RBP15.54■□□□□ 0.08
LIMD1-202ENST00000440097 PURBQ96QR8 312 aaKnown RBP15.54■□□□□ 0.08
LIMD1-202ENST00000440097 BCAS3Q9H6U6 928 aa15.54■□□□□ 0.08
LIMD1-202ENST00000440097 TESPA1A2RU30 521 aaPredicted RBP15.54■□□□□ 0.08
LIMD1-202ENST00000440097 PPFIA4O75335 1185 aa15.54■□□□□ 0.08
LIMD1-202ENST00000440097 IPO7O95373 1038 aaKnown RBP15.54■□□□□ 0.08
LIMD1-202ENST00000440097 MYBP10242 640 aa15.54■□□□□ 0.08
LIMD1-202ENST00000440097 SKIDA1Q1XH10 827 aa15.54■□□□□ 0.08
LIMD1-202ENST00000440097 ZCWPW2Q504Y3 356 aa15.54■□□□□ 0.08
LIMD1-202ENST00000440097 ARHGEF16Q5VV41 709 aa15.54■□□□□ 0.08
LIMD1-202ENST00000440097 CCDC155Q8N6L0 562 aa15.54■□□□□ 0.08
LIMD1-202ENST00000440097 RETREG2Q8NC44 543 aa15.54■□□□□ 0.08
LIMD1-202ENST00000440097 AFAP1L1Q8TED9 768 aa15.54■□□□□ 0.08
LIMD1-202ENST00000440097 SMCR8Q8TEV9 937 aaPredicted RBP15.54■□□□□ 0.08
LIMD1-202ENST00000440097 CETN3O15182 167 aa15.53■□□□□ 0.08
LIMD1-202ENST00000440097 SYF2O95926 243 aaKnown RBP15.53■□□□□ 0.08
LIMD1-202ENST00000440097 SNRNP48Q6IEG0 339 aaKnown RBP15.53■□□□□ 0.08
LIMD1-202ENST00000440097 MAEAQ7L5Y9 396 aa15.53■□□□□ 0.08
LIMD1-202ENST00000440097 CCDC43Q96MW1 224 aaKnown RBP15.53■□□□□ 0.08
LIMD1-202ENST00000440097 NACC1Q96RE7 527 aa15.53■□□□□ 0.08
LIMD1-202ENST00000440097 ERGIC2Q96RQ1 377 aa15.53■□□□□ 0.08
LIMD1-202ENST00000440097 RNF146Q9NTX7 359 aa15.53■□□□□ 0.08
LIMD1-202ENST00000440097 RNF216Q9NWF9 866 aaPredicted RBP15.53■□□□□ 0.08
LIMD1-202ENST00000440097 TMOD4Q9NZQ9 345 aa15.53■□□□□ 0.08
LIMD1-202ENST00000440097 UTP18Q9Y5J1 556 aaKnown RBP eCLIP15.53■□□□□ 0.08
LIMD1-202ENST00000440097 EPN1Q9Y6I3 576 aaPredicted RBP15.53■□□□□ 0.08
LIMD1-202ENST00000440097 FRMD3A2A2Y4 597 aa15.53■□□□□ 0.08
LIMD1-202ENST00000440097 DDNO94850 711 aaPredicted RBP15.53■□□□□ 0.08
LIMD1-202ENST00000440097 ZBED6P86452 979 aa15.53■□□□□ 0.08
LIMD1-202ENST00000440097 WDR93Q6P2C0 686 aa15.53■□□□□ 0.08
LIMD1-202ENST00000440097 CACNA2D4Q7Z3S7 1137 aa15.53■□□□□ 0.08
LIMD1-202ENST00000440097 DNAJC7Q99615 494 aa15.53■□□□□ 0.08
LIMD1-202ENST00000440097 GEMIN8Q9NWZ8 242 aaKnown RBP15.53■□□□□ 0.08
LIMD1-202ENST00000440097 MYO6Q9UM54 1294 aa15.53■□□□□ 0.08
LIMD1-202ENST00000440097 TFR2Q9UP52 801 aa15.53■□□□□ 0.08
LIMD1-202ENST00000440097 ARHGEF35A5YM69 484 aa15.53■□□□□ 0.08
LIMD1-202ENST00000440097 NDUFA10O95299 355 aa15.53■□□□□ 0.08
LIMD1-202ENST00000440097 TUBBP07437 444 aa15.53■□□□□ 0.08
LIMD1-202ENST00000440097 HIRAP54198 1017 aaPredicted RBP15.53■□□□□ 0.08
LIMD1-202ENST00000440097 KNOP1Q1ED39 458 aaKnown RBP15.53■□□□□ 0.08
LIMD1-202ENST00000440097 TKFCQ3LXA3 575 aa15.53■□□□□ 0.08
LIMD1-202ENST00000440097 CRACR2AQ9BSW2 395 aa15.53■□□□□ 0.08
LIMD1-202ENST00000440097 KCTD10Q9H3F6 313 aa15.53■□□□□ 0.08
LIMD1-202ENST00000440097 WRAP73Q9P2S5 460 aaPredicted RBP15.53■□□□□ 0.08
LIMD1-202ENST00000440097 RIPK3Q9Y572 518 aa15.53■□□□□ 0.08
LIMD1-202ENST00000440097 ARHGAP25P42331 645 aa15.52■□□□□ 0.08
LIMD1-202ENST00000440097 EPHA7Q15375 998 aa15.52■□□□□ 0.08
LIMD1-202ENST00000440097 SUPT20HL1Q3ZLR7 823 aa15.52■□□□□ 0.08
LIMD1-202ENST00000440097 KLRG1Q96E93 195 aa15.52■□□□□ 0.08
LIMD1-202ENST00000440097 CEP63Q96MT8 703 aa15.52■□□□□ 0.08
LIMD1-202ENST00000440097 RIT2Q99578 217 aa15.52■□□□□ 0.08
LIMD1-202ENST00000440097 GNA14O95837 355 aa15.52■□□□□ 0.07
LIMD1-202ENST00000440097 AARSP49588 968 aaKnown RBP eCLIP15.52■□□□□ 0.07
LIMD1-202ENST00000440097 MRPS9P82933 396 aaKnown RBP15.52■□□□□ 0.07
LIMD1-202ENST00000440097 AMPD2Q01433 879 aa15.52■□□□□ 0.07
LIMD1-202ENST00000440097 BAATQ14032 418 aaPredicted RBP15.52■□□□□ 0.07
LIMD1-202ENST00000440097 PCNX4Q63HM2 1172 aa15.52■□□□□ 0.07
LIMD1-202ENST00000440097 WDR59Q6PJI9 974 aa15.52■□□□□ 0.07
LIMD1-202ENST00000440097 EFCAB13Q8IY85 973 aa15.52■□□□□ 0.07
LIMD1-202ENST00000440097 FECHP22830 423 aa15.51■□□□□ 0.07
LIMD1-202ENST00000440097 PGM5Q15124 567 aa15.51■□□□□ 0.07
LIMD1-202ENST00000440097 DNAJC21Q5F1R6 531 aaKnown RBP15.51■□□□□ 0.07
LIMD1-202ENST00000440097 TTYH3Q9C0H2 523 aa15.51■□□□□ 0.07
LIMD1-202ENST00000440097 PARVGQ9HBI0 331 aa15.51■□□□□ 0.07
LIMD1-202ENST00000440097 ZNF112Q9UJU3 913 aa15.51■□□□□ 0.07
LIMD1-202ENST00000440097 GUCA1BQ9UMX6 200 aa15.51■□□□□ 0.07
LIMD1-202ENST00000440097 EPHB6O15197 1021 aa15.51■□□□□ 0.07
LIMD1-202ENST00000440097 CALUO43852 315 aaPredicted RBP15.51■□□□□ 0.07
LIMD1-202ENST00000440097 NMT1P30419 496 aaKnown RBP15.51■□□□□ 0.07
LIMD1-202ENST00000440097 TCERG1LQ5VWI1 586 aa15.51■□□□□ 0.07
LIMD1-202ENST00000440097 PPP4R3CPQ6ZMV5 832 aa15.51■□□□□ 0.07
LIMD1-202ENST00000440097 RRAGAQ7L523 313 aa15.51■□□□□ 0.07
LIMD1-202ENST00000440097 KIAA1328Q86T90 577 aa15.51■□□□□ 0.07
LIMD1-202ENST00000440097 RIN2Q8WYP3 895 aaPredicted RBP15.51■□□□□ 0.07
LIMD1-202ENST00000440097 SH2D3AQ9BRG2 576 aa15.51■□□□□ 0.07
LIMD1-202ENST00000440097 DEF6Q9H4E7 631 aa15.51■□□□□ 0.07
LIMD1-202ENST00000440097 VIPAS39Q9H9C1 493 aa15.51■□□□□ 0.07
LIMD1-202ENST00000440097 TULP1O00294 542 aaPredicted RBP15.5■□□□□ 0.07
LIMD1-202ENST00000440097 CLIC2O15247 247 aa15.5■□□□□ 0.07
LIMD1-202ENST00000440097 CYLC1P35663 651 aaPredicted RBP15.5■□□□□ 0.07
LIMD1-202ENST00000440097 KCNA1Q09470 495 aa15.5■□□□□ 0.07
LIMD1-202ENST00000440097 COG2Q14746 738 aa15.5■□□□□ 0.07
LIMD1-202ENST00000440097 DCAF17Q5H9S7 520 aaPredicted RBP15.5■□□□□ 0.07
LIMD1-202ENST00000440097 ODR4Q5SWX8 454 aa15.5■□□□□ 0.07
LIMD1-202ENST00000440097 FAM178BQ8IXR5 827 aa15.5■□□□□ 0.07
LIMD1-202ENST00000440097 CCDC42Q96M95 316 aa15.5■□□□□ 0.07
LIMD1-202ENST00000440097 NHEJ1Q9H9Q4 299 aaPredicted RBP15.5■□□□□ 0.07
LIMD1-202ENST00000440097 NLRC4Q9NPP4 1024 aa15.5■□□□□ 0.07
LIMD1-202ENST00000440097 JADE2Q9NQC1 790 aa15.5■□□□□ 0.07
LIMD1-202ENST00000440097 RNF181Q9P0P0 153 aa15.5■□□□□ 0.07
LIMD1-202ENST00000440097 PNMA2Q9UL42 364 aa15.5■□□□□ 0.07
LIMD1-202ENST00000440097 HPCAL4Q9UM19 191 aa15.5■□□□□ 0.07
LIMD1-202ENST00000440097 C19orf81C9J6K1 198 aa15.5■□□□□ 0.07
LIMD1-202ENST00000440097 CPP00450 1065 aa15.5■□□□□ 0.07
LIMD1-202ENST00000440097 FDX1P10109 184 aa15.5■□□□□ 0.07
LIMD1-202ENST00000440097 GAP43P17677 238 aa15.5■□□□□ 0.07
LIMD1-202ENST00000440097 ITGB3BPQ13352 177 aaPredicted RBP15.5■□□□□ 0.07
LIMD1-202ENST00000440097 EDRF1Q3B7T1 1238 aa15.5■□□□□ 0.07
LIMD1-202ENST00000440097 ZC2HC1CQ53FD0 456 aaPredicted RBP15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms