RNA–Protein interactions for RNA: ENST00000439453.5

HPS4-206, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 3,936 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-206ENST00000439453 HSD17B3P37058 310 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 CCSER1Q9C0I3 900 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 NDST4Q9H3R1 872 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 BRCA2P51587 3418 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 RLFQ13129 1914 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 A0A1B0GUA9 196 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 C5orf60A6NFR6 353 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 H0YGN5 161 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 PALMO75781 387 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 NEBLO76041 1014 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 ECM2O94769 699 aaPredicted RBP9.37□□□□□ -0.91
HPS4-206ENST00000439453 FTCDO95954 541 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 XRCC4Q13426 336 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 BYSLQ13895 437 aaKnown RBP9.37□□□□□ -0.91
HPS4-206ENST00000439453 HLTFQ14527 1009 aaKnown RBP eCLIP9.37□□□□□ -0.91
HPS4-206ENST00000439453 PFKFB3Q16875 520 aaPredicted RBP9.37□□□□□ -0.91
HPS4-206ENST00000439453 LRCH2Q5VUJ6 765 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 OR2W6PQ8NHA6 318 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 NFS1Q9Y697 457 aa9.37□□□□□ -0.91
HPS4-206ENST00000439453 ZSWIM8A7E2V4 1837 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 ATP2C2O75185 946 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 MYBP10242 640 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 FCER1AP12319 257 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 ERCC3P19447 782 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 PPP1R2P41236 205 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 RNASE9P60153 205 aaKnown RBP9.36□□□□□ -0.91
HPS4-206ENST00000439453 TNNC1P63316 161 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 PICALMQ13492 652 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 PDXDC1Q6P996 788 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 BLIDQ8IZY5 108 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 TGFBRAP1Q8WUH2 860 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.36□□□□□ -0.91
HPS4-206ENST00000439453 BAP1Q92560 729 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 RAPGEF5Q92565 580 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 INPP4AQ96PE3 977 aaPredicted RBP9.36□□□□□ -0.91
HPS4-206ENST00000439453 ISCUQ9H1K1 167 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 TMEM60Q9H2L4 133 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 SNCAIPQ9Y6H5 919 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 MYH4Q9Y623 1939 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 OPLAHO14841 1288 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 PPP1R12AO14974 1030 aaPredicted RBP9.36□□□□□ -0.91
HPS4-206ENST00000439453 AOC2O75106 756 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 HUNKP57058 714 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 ASIC1P78348 528 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 JAG1P78504 1218 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 ZNF844Q08AG5 666 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 BIRC3Q13489 604 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 PRKG1Q13976 671 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 UAP1Q16222 522 aaPredicted RBP9.36□□□□□ -0.91
HPS4-206ENST00000439453 CCDC84Q86UT8 332 aaPredicted RBP9.36□□□□□ -0.91
HPS4-206ENST00000439453 TAX1BP1Q86VP1 789 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 MAPKAPK5Q8IW41 473 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 KLHL7Q8IXQ5 586 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 SEMA6BQ9H3T3 888 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 BCCIPQ9P287 314 aaKnown RBP eCLIP9.36□□□□□ -0.91
HPS4-206ENST00000439453 ABT1Q9ULW3 272 aaKnown RBP9.36□□□□□ -0.91
HPS4-206ENST00000439453 SSU72P8A0A1W2PR75 194 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 BACH1O14867 736 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 MGRN1O60291 552 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 DNAJC8O75937 253 aaPredicted RBP9.36□□□□□ -0.91
HPS4-206ENST00000439453 CALML3P27482 149 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 TNNI2P48788 182 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 ERVK-9P63128 1117 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 PPP2R2AP63151 447 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 SHROOM1Q2M3G4 852 aaPredicted RBP9.36□□□□□ -0.91
HPS4-206ENST00000439453 DEFB115Q30KQ5 88 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 ODF2Q5BJF6 829 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 RUFY4Q6ZNE9 571 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 FMNL3Q8IVF7 1028 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 P3H4Q92791 437 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 HVCN1Q96D96 273 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 TRIM9Q9C026 710 aa9.36□□□□□ -0.91
HPS4-206ENST00000439453 CNOT8Q9UFF9 292 aaKnown RBP9.36□□□□□ -0.91
HPS4-206ENST00000439453 MAGEB6P1A0A0J9YX57 407 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 FRMD3A2A2Y4 597 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 PLCG1P19174 1290 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 CTNNA1P35221 906 aaKnown RBP9.35□□□□□ -0.91
HPS4-206ENST00000439453 MAN2A1Q16706 1144 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 TDRD12Q587J7 1177 aaKnown RBP9.35□□□□□ -0.91
HPS4-206ENST00000439453 ARMC9Q7Z3E5 817 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 C2orf69Q8N8R5 385 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 EIF1ADQ8N9N8 165 aaKnown RBP9.35□□□□□ -0.91
HPS4-206ENST00000439453 USP38Q8NB14 1042 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 RASGRP4Q8TDF6 673 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 CNKSR2Q8WXI2 1034 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 TATDN2Q93075 761 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 LRRC45Q96CN5 670 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 CAPNS2Q96L46 248 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 CUEDC2Q9H467 287 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 MAGEF1Q9HAY2 307 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 CYP2D7A0A087X1C5 515 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 RBAK-RBAKDNI3L0D1 243 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 RTN2O75298 545 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 PAEPP09466 180 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 ECHS1P30084 290 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 GBP2P32456 591 aaPredicted RBP9.35□□□□□ -0.91
HPS4-206ENST00000439453 VGLL4Q14135 290 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 NAB2Q15742 525 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 MEI1Q5TIA1 1274 aa9.35□□□□□ -0.91
HPS4-206ENST00000439453 AGBL2Q5U5Z8 902 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms