RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 L1RE1Q9UN81 338 aa10.42□□□□□ -0.74
CUX1-206ENST00000437600 A0A087X0T9 212 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 CCDC151A5D8V7 595 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 TMEM150BA6NC51 233 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 GCOM1H8Y6P7 765 aaPredicted RBP10.41□□□□□ -0.74
CUX1-206ENST00000437600 TBC1D12O60347 775 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 LRRN2O75325 713 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 AKAP3O75969 853 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 FAM228BP0C875 321 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 POLR2MP0CAP2 368 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 ARP10275 920 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 GCFC2P16383 781 aaKnown RBP10.41□□□□□ -0.74
CUX1-206ENST00000437600 SREBF1P36956 1147 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 PSEN1P49768 467 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 USP11P51784 963 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 VAV2P52735 878 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 LRRC63Q05C16 580 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 AP3B2Q13367 1082 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 ZCWPW2Q504Y3 356 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 HGSNATQ68CP4 663 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 CRYGNQ8WXF5 182 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 CLMNQ96JQ2 1002 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 EIF2AK1Q9BQI3 630 aaKnown RBP10.41□□□□□ -0.74
CUX1-206ENST00000437600 NT5C3AQ9H0P0 336 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 KCTD10Q9H3F6 313 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 COL20A1Q9P218 1284 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 DMGDHQ9UI17 866 aaKnown RBP10.41□□□□□ -0.74
CUX1-206ENST00000437600 ZHX2Q9Y6X8 837 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 SORBS3O60504 671 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 VCAM1P19320 739 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 HMGCS2P54868 508 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 IL31RAQ8NI17 732 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 DYDC2Q96IM9 177 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 LRRC1Q9BTT6 524 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 CALCOCO1Q9P1Z2 691 aa10.41□□□□□ -0.74
CUX1-206ENST00000437600 TISP43B9A030 160 aa10.4□□□□□ -0.74
CUX1-206ENST00000437600 MKRN3Q13064 507 aaKnown RBP10.4□□□□□ -0.74
CUX1-206ENST00000437600 CASP8Q14790 479 aa10.4□□□□□ -0.74
CUX1-206ENST00000437600 WHAMMP3Q1A5X7 153 aa10.4□□□□□ -0.74
CUX1-206ENST00000437600 MUM1L1Q5H9M0 696 aa10.4□□□□□ -0.74
CUX1-206ENST00000437600 MYCT1Q8N699 235 aa10.4□□□□□ -0.74
CUX1-206ENST00000437600 RETREG2Q8NC44 543 aa10.4□□□□□ -0.74
CUX1-206ENST00000437600 BANK1Q8NDB2 785 aa10.4□□□□□ -0.74
CUX1-206ENST00000437600 RANBP17Q9H2T7 1088 aaKnown RBP10.4□□□□□ -0.74
CUX1-206ENST00000437600 ZNF536O15090 1300 aa10.4□□□□□ -0.74
CUX1-206ENST00000437600 ZSCAN5CA6NGD5 496 aaPredicted RBP10.4□□□□□ -0.74
CUX1-206ENST00000437600 TMCO5BA8MYB1 307 aa10.4□□□□□ -0.74
CUX1-206ENST00000437600 CAPN2P17655 700 aa10.4□□□□□ -0.74
CUX1-206ENST00000437600 KLRC1P26715 233 aa10.4□□□□□ -0.74
CUX1-206ENST00000437600 NSMFQ6X4W1 530 aa10.4□□□□□ -0.74
CUX1-206ENST00000437600 CCDC170Q8IYT3 715 aa10.4□□□□□ -0.74
CUX1-206ENST00000437600 L3MBTL3Q96JM7 780 aaPredicted RBP10.4□□□□□ -0.74
CUX1-206ENST00000437600 RPAP3Q9H6T3 665 aaPredicted RBP10.4□□□□□ -0.74
CUX1-206ENST00000437600 AJAP1Q9UKB5 411 aaPredicted RBP10.4□□□□□ -0.74
CUX1-206ENST00000437600 ADAM21Q9UKJ8 722 aa10.4□□□□□ -0.74
CUX1-206ENST00000437600 COL2A1P02458 1487 aaPredicted RBP10.39□□□□□ -0.75
CUX1-206ENST00000437600 ESYT3A0FGR9 886 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 USP2O75604 605 aaPredicted RBP10.39□□□□□ -0.75
CUX1-206ENST00000437600 SLITRK3O94933 977 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 EIF2AK2P19525 551 aaKnown RBP10.39□□□□□ -0.75
CUX1-206ENST00000437600 TRADDQ15628 312 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 PDXDC1Q6P996 788 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 CREG2Q8IUH2 290 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 ATG4CQ96DT6 458 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 KLRG1Q96E93 195 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 GLT8D2Q9H1C3 349 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 SH2D4AQ9H788 454 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 FAN1Q9Y2M0 1017 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 CETN3O15182 167 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 USO1O60763 962 aaKnown RBP10.39□□□□□ -0.75
CUX1-206ENST00000437600 RPA1P27694 616 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 LMAN1P49257 510 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 PSMD2Q13200 908 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 VGLL4Q14135 290 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 KIAA0753Q2KHM9 967 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 SFMBT2Q5VUG0 894 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 PAPD7Q5XG87 772 aaKnown RBP10.39□□□□□ -0.75
CUX1-206ENST00000437600 TRIM59Q8IWR1 403 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 CDCA5Q96FF9 252 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 RABEP2Q9H5N1 569 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 MYO1AQ9UBC5 1043 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 FEM1BQ9UK73 627 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 HYOU1Q9Y4L1 999 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 RIPK3Q9Y572 518 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 OTOFQ9HC10 1997 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 IGLV3-22A0A075B6J6 115 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 FGFR1OPO95684 399 aaKnown RBP10.39□□□□□ -0.75
CUX1-206ENST00000437600 FOSP01100 380 aaPredicted RBP10.39□□□□□ -0.75
CUX1-206ENST00000437600 KLHL30Q0D2K2 578 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 ORC2Q13416 577 aaPredicted RBP10.39□□□□□ -0.75
CUX1-206ENST00000437600 BRD3Q15059 726 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 KNOP1Q1ED39 458 aaKnown RBP10.39□□□□□ -0.75
CUX1-206ENST00000437600 LRCH2Q5VUJ6 765 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 SLFN12Q8IYM2 578 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 PRPF38AQ8NAV1 312 aaKnown RBP10.39□□□□□ -0.75
CUX1-206ENST00000437600 MSANTD4Q8NCY6 345 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 CHORDC1Q9UHD1 332 aaPredicted RBP10.39□□□□□ -0.75
CUX1-206ENST00000437600 RABGAP1Q9Y3P9 1069 aa10.39□□□□□ -0.75
CUX1-206ENST00000437600 MKI67P46013 3256 aaKnown RBP10.38□□□□□ -0.75
CUX1-206ENST00000437600 CYP3A7-CYP3A51PA0A087WV96 503 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms