RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 PTPREP23469 700 aa11.58□□□□□ -0.56
TCOF1-204ENST00000427724 PPP1R2P41236 205 aa11.58□□□□□ -0.56
TCOF1-204ENST00000427724 SNX16P57768 344 aa11.58□□□□□ -0.56
TCOF1-204ENST00000427724 PFKFB3Q16875 520 aaPredicted RBP11.58□□□□□ -0.56
TCOF1-204ENST00000427724 FKBP1CQ5VVH2 108 aa11.58□□□□□ -0.56
TCOF1-204ENST00000427724 DCUN1D2Q6PH85 259 aa11.58□□□□□ -0.56
TCOF1-204ENST00000427724 SRGAP1Q7Z6B7 1085 aa11.58□□□□□ -0.56
TCOF1-204ENST00000427724 RPF1Q9H9Y2 349 aaKnown RBP11.58□□□□□ -0.56
TCOF1-204ENST00000427724 NLRC4Q9NPP4 1024 aa11.58□□□□□ -0.56
TCOF1-204ENST00000427724 GOLGA6AQ9NYA3 693 aa11.58□□□□□ -0.56
TCOF1-204ENST00000427724 SRPRBQ9Y5M8 271 aaKnown RBP11.58□□□□□ -0.56
TCOF1-204ENST00000427724 POTEB3A0JP26 581 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 EVI5O60447 810 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 TUBBP07437 444 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 SEPT7Q16181 437 aaKnown RBP11.57□□□□□ -0.56
TCOF1-204ENST00000427724 POTEBQ6S5H4 581 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 PPM1KQ8N3J5 372 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 SOCS4Q8WXH5 440 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 IFT81Q8WYA0 676 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 DYDC2Q96IM9 177 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 FAM204AQ9H8W3 233 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 ATP6V0A4Q9HBG4 840 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.57□□□□□ -0.56
TCOF1-204ENST00000427724 TCHHQ07283 1943 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 TNFAIP3P21580 790 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 TRAPPC10P48553 1259 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 COPB1P53618 953 aaKnown RBP11.57□□□□□ -0.56
TCOF1-204ENST00000427724 LACTBP83111 547 aaPredicted RBP11.57□□□□□ -0.56
TCOF1-204ENST00000427724 FMR1Q06787 632 aaKnown RBP eCLIP11.57□□□□□ -0.561e-6■■■■□ 20.4
TCOF1-204ENST00000427724 NAA25Q14CX7 972 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 CCDC50Q8IVM0 306 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 RNF149Q8NC42 400 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 MCPH1Q8NEM0 835 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 ANKRD36BP1Q96IX9 119 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 GSDMAQ96QA5 445 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 IRX2Q9BZI1 471 aaPredicted RBP11.57□□□□□ -0.56
TCOF1-204ENST00000427724 CLIC2O15247 247 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 CCT5P48643 541 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 PRELPP51888 382 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 C1orf228Q6PIY5 440 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 CCDC114Q96M63 670 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 IDI2Q9BXS1 227 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 EPN1Q9Y6I3 576 aaPredicted RBP11.57□□□□□ -0.56
TCOF1-204ENST00000427724 TEX33O43247 280 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 TDP2O95551 362 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 CTCFP49711 727 aaPredicted RBP11.57□□□□□ -0.56
TCOF1-204ENST00000427724 CASP7P55210 303 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 IFFO1Q0D2I5 559 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 LAMC2Q13753 1193 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 CFAP58Q5T655 872 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 ADGRA1Q86SQ6 560 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 SCN4BQ8IWT1 228 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 SRBD1Q8N5C6 995 aaKnown RBP11.57□□□□□ -0.56
TCOF1-204ENST00000427724 CCDC51Q96ER9 411 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 ARMCX3Q9UH62 379 aaPredicted RBP11.57□□□□□ -0.56
TCOF1-204ENST00000427724 AGTPBP1Q9UPW5 1226 aa11.57□□□□□ -0.56
TCOF1-204ENST00000427724 ARHGEF37A1IGU5 675 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 GOLGA8IPA6NC78 632 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 GOLGA8JA6NMD2 632 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 CLGNO14967 610 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 CLDN3O15551 220 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 POTEIP0CG38 1075 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 EZRP15311 586 aaKnown RBP11.56□□□□□ -0.56
TCOF1-204ENST00000427724 SFNP31947 248 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 GRK4P32298 578 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 LONP1P36776 959 aaKnown RBP11.56□□□□□ -0.56
TCOF1-204ENST00000427724 MTF1Q14872 753 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 ZNF568Q3ZCX4 644 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 PRAMEF19Q5SWL8 479 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 NYAP1Q6ZVC0 841 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 WDR24Q96S15 920 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 SAR1BQ9Y6B6 198 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 CAPN7Q9Y6W3 813 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 GTPBP6O43824 516 aaPredicted RBP11.56□□□□□ -0.56
TCOF1-204ENST00000427724 RPN1P04843 607 aaKnown RBP11.56□□□□□ -0.56
TCOF1-204ENST00000427724 P4HBP07237 508 aaKnown RBP11.56□□□□□ -0.56
TCOF1-204ENST00000427724 SUPT20HL2P0C7V6 817 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 XRCC5P13010 732 aaKnown RBP11.56□□□□□ -0.56
TCOF1-204ENST00000427724 TUBB2AQ13885 445 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 PADI6Q6TGC4 694 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 DLG5Q8TDM6 1919 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 MSTO1Q9BUK6 570 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 TUBB2BQ9BVA1 445 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 KIAA1683Q9H0B3 1180 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 PARVGQ9HBI0 331 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 C1orf112Q9NSG2 853 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 HPS5Q9UPZ3 1129 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 PGK1P00558 417 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 PLA2G4BP0C869 781 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 YWHAEP62258 255 aaKnown RBP11.56□□□□□ -0.56
TCOF1-204ENST00000427724 LRRC45Q96CN5 670 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 PAGE5Q96GU1 130 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 YME1L1Q96TA2 773 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 STIM2Q9P246 746 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 FAM198AQ9UFP1 575 aa11.56□□□□□ -0.56
TCOF1-204ENST00000427724 ZMYND10O75800 440 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 PRKAR2AP13861 404 aaKnown RBP11.55□□□□□ -0.56
TCOF1-204ENST00000427724 AKR1A1P14550 325 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 PSMC5P62195 406 aa11.55□□□□□ -0.56
TCOF1-204ENST00000427724 ADAM9Q13443 819 aa11.55□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms